Evidence map›Paper›PMID 28315254›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2017

Live-Cell Imaging of Protease Activity: Assays to Screen Therapeutic Approaches.

Anita Chalasani, Kyungmin Ji, Mansoureh Sameni, Samia H Mazumder, Yong Xu, Kamiar Moin, Bonnie F Sloane

Open access · greenAbstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. In Vitro Models for Studying Invasive Transitions of Ductal Carcinoma In Situ.Journal of mammary gland biology and neoplasia · 2019
    Review
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Anita ChalasaniDepartment of Pharmacology, School of Medicine, Wayne State University, Detroit, MI, 48201, USA.
Kyungmin JiDepartment of Pharmacology, School of Medicine, Wayne State University, Detroit, MI, 48201, USA.
Mansoureh SameniDepartment of Pharmacology, School of Medicine, Wayne State University, Detroit, MI, 48201, USA.
Samia H MazumderDepartment of Pharmacology, School of Medicine, Wayne State University, Detroit, MI, 48201, USA.
Yong XuDepartment of Electrical and Computer Engineering, Wayne State University, Detroit, MI, 48202, USA.
Kamiar MoinDepartment of Pharmacology, School of Medicine, Wayne State University, Detroit, MI, 48201, USA.
Bonnie F SloaneDepartment of Pharmacology, School of Medicine, Wayne State University, Detroit, MI, 48201, USA. bsloane@med.wayne.edu.
Wayne State University · US

Funding

Tumor Biology and Microenvironment (Program 1)P30CA022453 · NCI · WAYNE STATE UNIVERSITY · PI PAUL M STEMMER · 1985 to 2026
$68.4M
Enhancing neoadjuvant chemotherpay responses with targeted T cellsR01CA140314 · NCI · WAYNE STATE UNIVERSITY · PI BEPLER, GEROLD · 2010 to 2015
$2.5M
Proteolytic Pathways in Progression of Pre-Malignant Breast DiseaseR01CA131990 · NCI · WAYNE STATE UNIVERSITY · PI MATTINGLY, RAYMOND R, SLOANE, BONNIE F · 2008 to 2013
$1.9M
4D Microfluidic Platforms for Targeting Breast Cancer:Lymphatic InteractionsR21CA175931 · NCI · WAYNE STATE UNIVERSITY · PI SLOANE, BONNIE F · 2013 to 2014
$359k
NCI NIH HHS P30 CA022453NCI NIH HHS R01 CA131990NCI NIH HHS R01 CA140314NCI NIH HHS R21 CA175931
6 · The paper itself

Abstract

Methodologies to image and quantify the activity of proteolytic enzymes have been developed in an effort to identify protease-related druggable pathways that are involved in malignant progression of cancer. Our laboratory has pioneered techniques for functional live-cell imaging of protease activity in pathomimetic avatars for breast cancer. We analyze proteolysis in the context of proliferation and formation of structures by tumor cells in 3-D cultures over time (4D). In order to recapitulate the cellular composition and architecture of tumors in the pathomimetic avatars, we include other tumor-associated cells (e.g., fibroblasts, myoepithelial cells, microvascular endothelial cells). We also model noncellular aspects of the tumor microenvironment such as acidic pericellular pH. Use of pathomimetic avatars in concert with various types of imaging probes has allowed us to image, quantify, and follow the dynamics of proteolysis in the tumor microenvironment and to test interventions that impact directly or indirectly on proteolytic pathways. To facilitate use of the pathomimetic avatars for screening of therapeutic modalities, we have designed and fabricated custom 3D culture chambers with multiple wells that are either individual or connected by a channel to allow cells to migrate between wells. Optical glass microscope slides underneath an acrylic plate allow the cultures to be imaged with an inverted microscope. Fluid ports in the acrylic plate are at a level above the 3D cultures to allow introduction of culture media and test agents such as drugs into the wells and the harvesting of media conditioned by the cultures for immunochemical and biochemical analyses. We are using the pathomimetic avatars to identify druggable pathways, screen drug and natural product libraries and accelerate entry of validated drugs or natural products into clinical trials.

Indexed as

Biological AssayCell Culture TechniquesCell Line, TumorDrug DiscoveryDrug Evaluation, PreclinicalEnzyme ActivationGene ExpressionGenes, ReporterHumansImage Processing, Computer-AssistedLuminescent ProteinsMicroscopy, ConfocalMolecular ImagingPeptide HydrolasesProteolysisSoftwareLuminescent ProteinsPeptide HydrolasesConfocal microscopyFluorescent imagingHigh-content imagingProteolysisScreening assays

Identifiers

PMID28315254
PMCPMC5500169
OpenAlexW2596826711

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.