Evidence map›Paper›PMID 28315031›Full record

ArticleDigestive diseases and sciences2017

Feasibility of Large-Scale Identification of Sessile Serrated Polyp Patients Using Electronic Records: A Utah Study.

Kajsa Affolter, Keith Gligorich, Niloy Jewel Samadder, Wade S Samowitz, Karen Curtin

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In one paragraph

Article in Digestive diseases and sciences, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Kajsa AffolterDepartment of Pathology, University of Utah School of Medicine, Salt Lake City, UT, USA. kajsa.affolter@hsc.utah.edu.ORCID 0000-0002-1703-0535
Keith GligorichDepartment of Oncological Sciences, University of Utah School of Medicine and Huntsman Cancer Institute, Salt Lake City, UT, USA.
Niloy Jewel SamadderDepartment of Internal Medicine, Gastroenterology, University of Utah School of Medicine and Huntsman Cancer Institute, Salt Lake City, UT, USA.
Wade S SamowitzDepartment of Pathology, University of Utah School of Medicine, Salt Lake City, UT, USA.
Karen CurtinDepartment of Internal Medicine, Gastroenterology, University of Utah School of Medicine and Huntsman Cancer Institute, Salt Lake City, UT, USA.
University of Utah · USHuntsman (United States) · US

Funding

UTAH REGIONAL CANCER CENTERP30CA042014 · NCI · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Jared P Rutter · 1986 to 2026
$72.6M
NCI NIH HHS HHSN261201200017INCI NIH HHS P30 CA042014
6 · The paper itself

Abstract

BACKGROUND/

aimsThe serrated pathway accounts for 15-25% of sporadic colorectal cancer (CRC). In our study, we sought to accurately characterize sessile serrated polyps (SSP) in a population by electronically interrogating colonoscopy patients' endoscopy and pathology reports using a rules-based text search of pre-defined SSP-related terms. To this aim, we compared a sample of putative SSP and hyperplastic polyps (HP) using our algorithm to a determination of SSP or HP by pathologist and molecular examination to determine the feasibility of large-scale identification of SSP in electronic medical records.

methodsIn 23,990 endoscopy reports from colonoscopies with pathology performed at a University of Utah Healthcare facility in 2000-2012, we identified serrated lesions and categorized each as putative SSP or HP using a text search algorithm. We obtained 93 tissue samples for histologic and molecular analysis.

resultsSerrated polyps were categorized as putative SSP (N = 920) and putative HP (N = 7159) by text search algorithm. Histologic examination of 93 samples identified 37 SSP, 11 probable SSP, and 45 HP. Of 26 putative SSP, 25 were SSP/probable SSP (96%) by histology. Of 67 putative HP, 44 were HP (66%) by histology. Reducing size criterion from ≥1 to ≥5 mm in the search algorithm caused improved sensitivity (77.1%) without decline in specificity (97.8%).

conclusionsA simple rules-based search to identify SSP provides "proof of principle" that SSP can be identified in a large electronic record set. Pilot data indicate defining large, right-sided polyps as ≥5 mm provides adequate sensitivity to detect SSP from electronic records while maintaining high specificity.

Indexed as

Data MiningElectronic Health RecordsAdenomaAgedAlgorithmsColonic PolypsColonoscopyColorectal NeoplasmsDNA Mutational AnalysisDNA, NeoplasmFeasibility StudiesFemaleHumansHyperplasiaMaleMiddle AgedDNA, NeoplasmColonoscopyReceiver operating characteristic curveSessile serrated adenoma/polypText mining

Identifiers

PMID28315031
OpenAlexW2595625368

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.