Evidence map›Paper›PMID 28314774›Full record

ArticleThe Journal of biological chemistry2017

The rare sugar

Francesco Piacente, Cristina De Castro, Sandra Jeudy, Matteo Gaglianone, Maria Elena Laugieri, Anna Notaro, Annalisa Salis, Gianluca Damonte, Chantal Abergel, Michela G Tonetti

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Giant viruses of themicroLife · 2022
    Article
  6. Article
  7. Review
  8. Biochemical analysis of a sugar 4,6-dehydratase from Acanthamoeba polyphaga Mimivirus.Protein science : a publication of the Protein Society · 2020
    Article
  9. Exploitation of glycosylation in enveloped virus pathobiology.Biochimica et biophysica acta. General subjects · 2019
    Review
  10. TheThe Journal of biological chemistry · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Francesco PiacenteFrom the Department of Experimental Medicine and Center of Excellence for Biomedical Research, University of Genova, 16126 Genova, Italy.
Cristina De Castrothe Departments of Agricultural Sciences and.
Sandra Jeudythe Aix-Marseille Université, Centre National de la Recherche Scientifique, Information Génomique et Structurale, UMR 7256, IMM FR3479, 13288 Marseille Cedex 9, France.
Matteo GaglianoneFrom the Department of Experimental Medicine and Center of Excellence for Biomedical Research, University of Genova, 16126 Genova, Italy.
Maria Elena LaugieriFrom the Department of Experimental Medicine and Center of Excellence for Biomedical Research, University of Genova, 16126 Genova, Italy.
Anna Notarothe Aix-Marseille Université, Centre National de la Recherche Scientifique, Information Génomique et Structurale, UMR 7256, IMM FR3479, 13288 Marseille Cedex 9, France.
Annalisa SalisFrom the Department of Experimental Medicine and Center of Excellence for Biomedical Research, University of Genova, 16126 Genova, Italy.
Gianluca DamonteFrom the Department of Experimental Medicine and Center of Excellence for Biomedical Research, University of Genova, 16126 Genova, Italy.
Chantal Abergelthe Aix-Marseille Université, Centre National de la Recherche Scientifique, Information Génomique et Structurale, UMR 7256, IMM FR3479, 13288 Marseille Cedex 9, France.
Michela G TonettiFrom the Department of Experimental Medicine and Center of Excellence for Biomedical Research, University of Genova, 16126 Genova, Italy, tonetti@unige.it.
University of Genoa · ITAix-Marseille Université · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The giant virus Mimivirus encodes an autonomous glycosylation system that is thought to be responsible for the formation of complex and unusual glycans composing the fibers surrounding its icosahedral capsid, including the dideoxyhexose viosamine. Previous studies have identified a gene cluster in the virus genome, encoding enzymes involved in nucleotide-sugar production and glycan formation, but the functional characterization of these enzymes and the full identification of the glycans found in viral fibers remain incomplete. Because viosamine is typically found in acylated forms, we suspected that one of the genes might encode an acyltransferase, providing directions to our functional annotations. Bioinformatic analyses indicated that the L142 protein contains an N-terminal acyltransferase domain and a predicted C-terminal glycosyltransferase. Sequence analysis of the structural model of the L142 N-terminal domain indicated significant homology with some characterized sugar acetyltransferases that modify the C-4 amino group in the bacillosamine or perosamine biosynthetic pathways. Using mass spectrometry and NMR analyses, we confirmed that the L142 N-terminal domain is a sugar acetyltransferase, catalyzing the transfer of an acetyl moiety from acetyl-CoA to the C-4 amino group of UDP-d-viosamine. The presence of acetylated viosamine

Indexed as

AcyltransferasesCapsid ProteinsGlycosylationMimiviridaeProtein DomainsAcyltransferasesCapsid Proteinsacetyl coenzyme A (acetyl-CoA)glycosylationmass spectrometry (MS)Mimivirusnuclear magnetic resonance (NMR)viosaminevirus

Identifiers

PMID28314774
PMCPMC5418040
OpenAlexW2595667498

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.