Evidence map›Paper›PMID 28302851›Full record

ArticleScience (New York, N.Y.)2017

Structural basis of the day-night transition in a bacterial circadian clock.

Roger Tseng, Nicolette F Goularte, Archana Chavan, Jansen Luu, Susan E Cohen, Yong-Gang Chang, Joel Heisler, Sheng Li, Alicia K Michael, Sarvind Tripathi and 3 more

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 105 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
105citing papers in PubMed, 1 pooled it
9.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

105 citing papers in PubMed, 1 synthesis or guideline pooled it, 187 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Article
  5. Article
  6. Fold-Switching Proteins.Annual review of biophysics · 2026
    Review
  7. The Phenotypic Landscape of a Circadian Clock.bioRxiv : the preprint server for biology · 2026
    Article
  8. Circadian clock proteins KaiB and Rbp2 ofMicrobiology spectrum · 2026
    Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. AlphaFold2's training set powers its predictions of some fold-switched conformations.Protein science : a publication of the Protein Society · 2025
    Article
  18. Review
  19. Article
  20. Article

45 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Roger TsengQuantitative and Systems Biology, University of California, Merced, CA 95343, USA.ORCID 0000-0002-2188-0321
Nicolette F GoularteDepartment of Chemistry and Biochemistry, University of California, Santa Cruz, CA 95064, USA.ORCID 0000-0001-6557-9349
Archana ChavanSchool of Natural Sciences, University of California, Merced, CA 95343, USA.ORCID 0000-0002-5691-8094
Jansen LuuDepartment of Chemistry and Biochemistry, University of California, Santa Cruz, CA 95064, USA.ORCID 0000-0002-4323-657X
Susan E CohenCenter for Circadian Biology, University of California, San Diego, La Jolla, CA 92093, USA.ORCID 0000-0003-3487-1990
Yong-Gang ChangSchool of Natural Sciences, University of California, Merced, CA 95343, USA.ORCID 0000-0002-5096-564X
Joel HeislerChemistry and Chemical Biology, University of California, Merced, CA 95343, USA.ORCID 0000-0002-2703-3035
Sheng LiDepartment of Medicine, University of California, San Diego, La Jolla, CA 92093, USA.
Alicia K MichaelDepartment of Chemistry and Biochemistry, University of California, Santa Cruz, CA 95064, USA.
Sarvind TripathiDepartment of Chemistry and Biochemistry, University of California, Santa Cruz, CA 95064, USA.ORCID 0000-0002-6959-0577
Susan S GoldenCenter for Circadian Biology, University of California, San Diego, La Jolla, CA 92093, USA.ORCID 0000-0002-4264-7019
Andy LiWangQuantitative and Systems Biology, University of California, Merced, CA 95343, USA. aliwang@ucmerced.edu cpartch@ucsc.edu.ORCID 0000-0003-4741-6946
Carrie L PartchDepartment of Chemistry and Biochemistry, University of California, Santa Cruz, CA 95064, USA. aliwang@ucmerced.edu cpartch@ucsc.edu.ORCID 0000-0002-4677-2861
University of California, Merced · USUniversity of California, Santa Cruz · USUniversity of California San Diego · US

Funding

Structure based design of antibodies and vaccinesU19AI117905 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI SCHIEF, WILLIAM R. · 2015 to 2019
$12.0M
Resource for Biocomputing Visualization and InformaticsP41GM103311 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2012 to 2017
$8.2M
ACTION OF LIPOLYTIC ENZYMESR01GM020501 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DENNIS, EDWARD A · 1985 to 2020
$7.3M
Undergraduate Summer Research Experience: Molecular and cellular mechanisms of circadian timekeeping in a prokaryote modelR35GM118290 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GOLDEN, SUSAN S · 2016 to 2025
$6.7M
Mechanism of receptor-mediated entry and infection by filovirusesR01AI101436 · NIAID · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI CHANDRAN, KARTIK · 2012 to 2016
$4.0M
Exploring the structural basis for 24-hour timekeeping in mammalsR01GM107069 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI PARTCH, CARRIE L · 2013 to 2020
$3.2M
The Linchpin that Joins the Circadian Oscillator to Clock OutputR01GM107521 · NIGMS · UNIVERSITY OF CALIFORNIA, MERCED · PI LIWANG, ANDY · 2014 to 2021
$2.8M
Atomic resolution analysis of timekeeping by a protein-based circadian clockR01GM121507 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI PARTCH, CARRIE L · 2017 to 2020
$1.8M
Disruption of the circadian clock by a cancer/testis antigenF31CA189660 · NCI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI MICHAEL, ALICIA · 2014 to 2016
$112k
NCI NIH HHS F31 CA189660NIAID NIH HHS R01 AI101436NIAID NIH HHS U19 AI117905NIGMS NIH HHS P41 GM103311NIGMS NIH HHS R01 GM020501NIGMS NIH HHS R01 GM107069NIGMS NIH HHS R01 GM107521NIGMS NIH HHS R01 GM121507NIGMS NIH HHS R35 GM118290
6 · The paper itself

Abstract

Circadian clocks are ubiquitous timing systems that induce rhythms of biological activities in synchrony with night and day. In cyanobacteria, timing is generated by a posttranslational clock consisting of KaiA, KaiB, and KaiC proteins and a set of output signaling proteins, SasA and CikA, which transduce this rhythm to control gene expression. Here, we describe crystal and nuclear magnetic resonance structures of KaiB-KaiC,KaiA-KaiB-KaiC, and CikA-KaiB complexes. They reveal how the metamorphic properties of KaiB, a protein that adopts two distinct folds, and the post-adenosine triphosphate hydrolysis state of KaiC create a hub around which nighttime signaling events revolve, including inactivation of KaiA and reciprocal regulation of the mutually antagonistic signaling proteins, SasA and CikA.

Indexed as

Circadian ClocksAdenosine TriphosphateBacterial ProteinsCircadian Rhythm Signaling Peptides and ProteinsCrystallography, X-RayCyanobacteriaHydrolysisNuclear Magnetic Resonance, BiomolecularProtein DomainsProtein KinasesProtein MultimerizationAdenosine TriphosphateBacterial ProteinsCikA protein, bacteriaCircadian Rhythm Signaling Peptides and ProteinsKaiA protein, cyanobacteriaKaiB protein, cyanobacteriaKaiC protein, cyanobacteriaProtein Kinases

Identifiers

PMID28302851
PMCPMC5441561
OpenAlexW2596246619

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.