Evidence map›Paper›PMID 28302717›Full record

ArticleThe Journal of biological chemistry2017

Regulatory signatures of liver regeneration distilled by integrative analysis of mRNA, histone methylation, and proteomics.

Yoshihiro Sato, Yasutake Katoh, Mitsuyo Matsumoto, Masaki Sato, Masayuki Ebina, Ari Itoh-Nakadai, Ryo Funayama, Keiko Nakayama, Michiaki Unno, Kazuhiko Igarashi

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. A 3D Cell Culture Model Identifies Wnt/Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2020
    Article
  6. Article
  7. The Dynamic Chromatin Architecture of the Regenerating Liver.Cellular and molecular gastroenterology and hepatology · 2020
    Article
  8. Article
  9. The Dominant Role of Forkhead Box Proteins in Cancer.International journal of molecular sciences · 2018
    Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yoshihiro SatoFrom the Department of Biochemistry.
Yasutake KatohFrom the Department of Biochemistry.
Mitsuyo MatsumotoFrom the Department of Biochemistry.
Masaki SatoFrom the Department of Biochemistry.
Masayuki EbinaFrom the Department of Biochemistry.
Ari Itoh-NakadaiFrom the Department of Biochemistry.
Ryo FunayamaCenter for Regulatory Epigenome and Diseases, and.
Keiko NakayamaCenter for Regulatory Epigenome and Diseases, and.
Michiaki UnnoDepartment of Gastroenterological Surgery.
Kazuhiko IgarashiFrom the Department of Biochemistry, igarashi@med.tohoku.ac.jp.ORCID 0000-0002-2470-2475

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The capacity of the liver to regenerate is likely to be encoded as a plasticity of molecular networks within the liver. By applying a combination of comprehensive analyses of the epigenome, transcriptome, and proteome, we herein depict the molecular landscape of liver regeneration. We demonstrated that histone H3 Lys-4 was trimethylated at the promoter regions of many loci, among which only a fraction, including cell-cycle-related genes, were transcriptionally up-regulated. A cistrome analysis guided by the histone methylation patterns and the transcriptome identified FOXM1 as the key transcription factor promoting liver regeneration, which was confirmed

Indexed as

Gene Expression RegulationLiver RegenerationAmino Acid MotifsAnimalsCarcinoma, HepatocellularCell Line, TumorCell ProliferationEpigenesis, GeneticForkhead Box Protein M1HistonesLiverLiver NeoplasmsLysineMaleMethylationMiceForkhead Box Protein M1Foxm1 protein, mouseHistonesLysineProteomeRNA, Messengerfunctional genomicshistone methylationproteomicsregenerationtranscriptomics

Identifiers

PMID28302717
PMCPMC5427278

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.