Evidence map›Paper›PMID 28301742›Full record

ReviewAnnual review of biochemistry2017

Microbial Rhodopsins: Diversity, Mechanisms, and Optogenetic Applications.

Elena G Govorunova, Oleg A Sineshchekov, Hai Li, John L Spudich

Open access · bronzeAbstract readReview
In one paragraph

Review in Annual review of biochemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 172 papers.

0numbers the graph read from it
0cells of the map it votes in
172citing papers in PubMed
13.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

172 citing papers in PubMed, 376 citations in OpenAlex.

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112 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Elena G GovorunovaCenter for Membrane Biology, Department of Biochemistry and Molecular Biology, McGovern Medical School, University of Texas Health Science Center at Houston, Houston, Texas 77030; email: Elena.G.Govorunova@uth.tmc.edu , Oleg.A.Sineshchekov@uth.tmc.edu , Hai.Li@uth.tmc.edu , John.L.Spudich@uth.tmc.edu.
Oleg A SineshchekovCenter for Membrane Biology, Department of Biochemistry and Molecular Biology, McGovern Medical School, University of Texas Health Science Center at Houston, Houston, Texas 77030; email: Elena.G.Govorunova@uth.tmc.edu , Oleg.A.Sineshchekov@uth.tmc.edu , Hai.Li@uth.tmc.edu , John.L.Spudich@uth.tmc.edu.
Hai LiCenter for Membrane Biology, Department of Biochemistry and Molecular Biology, McGovern Medical School, University of Texas Health Science Center at Houston, Houston, Texas 77030; email: Elena.G.Govorunova@uth.tmc.edu , Oleg.A.Sineshchekov@uth.tmc.edu , Hai.Li@uth.tmc.edu , John.L.Spudich@uth.tmc.edu.
John L SpudichCenter for Membrane Biology, Department of Biochemistry and Molecular Biology, McGovern Medical School, University of Texas Health Science Center at Houston, Houston, Texas 77030; email: Elena.G.Govorunova@uth.tmc.edu , Oleg.A.Sineshchekov@uth.tmc.edu , Hai.Li@uth.tmc.edu , John.L.Spudich@uth.tmc.edu.
The University of Texas Health Science Center at Houston · US

Funding

Structure/Function of Microbial Sensory RhodopsinsR01GM027750 · NIGMS · YESHIVA UNIVERSITY · PI SPUDICH, JOHN LEE · 1985 to 2020
$6.6M
NIGMS NIH HHS R01 GM027750
6 · The paper itself

Abstract

Microbial rhodopsins are a family of photoactive retinylidene proteins widespread throughout the microbial world. They are notable for their diversity of function, using variations of a shared seven-transmembrane helix design and similar photochemical reactions to carry out distinctly different light-driven energy and sensory transduction processes. Their study has contributed to our understanding of how evolution modifies protein scaffolds to create new protein chemistry, and their use as tools to control membrane potential with light is fundamental to optogenetics for research and clinical applications. We review the currently known functions and present more in-depth assessment of three functionally and structurally distinct types discovered over the past two years: (a) anion channelrhodopsins (ACRs) from cryptophyte algae, which enable efficient optogenetic neural suppression; (b) cryptophyte cation channelrhodopsins (CCRs), structurally distinct from the green algae CCRs used extensively for neural activation and from cryptophyte ACRs; and

Indexed as

ChlorophytaEvolution, MolecularGene ExpressionLightLight Signal TransductionMembrane PotentialsModels, MolecularOptogeneticsPhotochemical ProcessesPhylogenyPlant ProteinsProtein Conformation, alpha-HelicalProtein Conformation, beta-StrandProtein DomainsRetinoidsRhodopsins, MicrobialPlant ProteinsRetinoidsretinylidene chromophoreRhodopsins, MicrobialSensory Rhodopsinsanion channelrhodopsinscation channelrhodopsinsion pumpsoptogeneticsphotosensorsretinylidene proteins

Identifiers

PMID28301742
PMCPMC5747503
OpenAlexW2559574135

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.