Evidence map›Paper›PMID 28301511›Full record

ArticlePloS one2017

Dissection of TALE-dependent gene activation reveals that they induce transcription cooperatively and in both orientations.

Jana Streubel, Heidi Baum, Jan Grau, Johannes Stuttmann, Jens Boch

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
7.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. The RiceInternational journal of molecular sciences · 2022
    Article
  7. Article
  8. Complete Genome Assemblies of AllFrontiers in microbiology · 2021
    Article
  9. Review
  10. Article
  11. PthA4Molecular plant pathology · 2019
    Article
  12. Article
  13. Transcriptional Reprogramming of Rice Cells byFrontiers in plant science · 2019
    Article
  14. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Jana StreubelInstitute of Plant Genetics, Leibniz Universität Hannover, Hannover, Germany.
Heidi BaumDepartment of Plant Genetics, Martin-Luther-Universität Halle-Wittenberg, Halle (Saale), Germany.
Jan GrauInstitute of Computer Science, Martin-Luther-Universität Halle-Wittenberg, Halle (Saale), Germany.
Johannes Stuttmann
Jens BochInstitute of Plant Genetics, Leibniz Universität Hannover, Hannover, Germany.
Martin Luther University Halle-Wittenberg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plant-pathogenic Xanthomonas bacteria inject transcription activator-like effector proteins (TALEs) into host cells to specifically induce transcription of plant genes and enhance susceptibility. Although the DNA-binding mode is well-understood it is still ambiguous how TALEs initiate transcription and whether additional promoter elements are needed to support this. To systematically dissect prerequisites for transcriptional initiation the activity of one TALE was compared on different synthetic Bs4 promoter fragments. In addition, a large collection of artificial TALEs spanning the OsSWEET14 promoter was compared. We show that the presence of a TALE alone is not sufficient to initiate transcription suggesting the requirement of additional supporting promoter elements. At the OsSWEET14 promoter TALEs can initiate transcription from various positions, in a synergistic manner of multiple TALEs binding in parallel to the promoter, and even by binding in reverse orientation. TALEs are known to shift the transcriptional start site, but our data show that this shift depends on the individual position of a TALE within a promoter context. Our results implicate that TALEs function like classical enhancer-binding proteins and initiate transcription in both orientations which has consequences for in planta target gene prediction and design of artificial activators.

Indexed as

Genes, BacterialTranscription, GeneticPromoter Regions, GeneticTrans-ActivatorsXanthomonasTrans-Activators

Identifiers

PMID28301511
PMCPMC5354296
OpenAlexW2595232447

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.