Evidence map›Paper›PMID 28301456›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2017

Prediction of breast cancer risk based on flow-variant analysis of circulating peripheral blood B cells.

Mahrukh M Syeda, Kinnari Upadhyay, Johnny Loke, Alexander Pearlman, Susan Klugman, Yongzhao Shao, Harry Ostrer

Open access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.2field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Cancer Risk C (CR-C), a functional genomics test is a sensitive and rapid test for germline mismatch repair deficiency.Genetics in medicine : official journal of the American College of Medical Genetics · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Mahrukh M SyedaDepartment of Pathology, Albert Einstein College of Medicine, Bronx, New York, USA.ORCID 0000-0002-4081-2068
Kinnari UpadhyayDepartment of Pathology, Albert Einstein College of Medicine, Bronx, New York, USA.
Johnny LokeDepartment of Pathology, Albert Einstein College of Medicine, Bronx, New York, USA.
Alexander PearlmanDepartment of Pathology, Albert Einstein College of Medicine, Bronx, New York, USA.
Susan KlugmanDepartment of Obstetrics and Gynecology, Albert Einstein College of Medicine, Bronx, New York, USA.
Yongzhao ShaoDepartment of Population Health, Division of Biostatistics, New York University School of Medicine, New York, New York, USA.
Harry OstrerDepartment of Pathology, Albert Einstein College of Medicine, Bronx, New York, USA.ORCID 0000-0002-2209-5376
Albert Einstein College of Medicine · USNew York University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeIdentifying women at high risk for breast cancer can trigger a personal program of annual mammograms and magnetic resonance imaging scans for early detection, prophylactic surgery, or chemoprevention to reduce the risk of cancer. Yet, current strategies to identify high-risk mutations based on sequencing panels of genes have significant false-positive and false-negative results, suggesting the need for alternative approaches.

methodsFlow-variant assays (FVAs) that assess the effects of mutations in the double-strand break (DSB) repair genetic pathway in lymphoblastoid cells in response to treatment with radiomimetic agents were assessed for sensitivity, specificity, and accuracy both alone and as part of a logistic regression classification score. In turn, these assays were validated in circulating B cells and applied to individuals with personal and/or family history of breast and/or ovarian cancer.

resultsA three-FVA classification score based on logistic regression had 95% accuracy. Individuals from a breast cancer-positive cohort with affected family members had high-risk FVA classification scores.

conclusionApplication of a classification score based on multiple FVAs could represent an alternative to panel sequencing for identifying women at high risk for cancer.Genet Med advance online publication 16 March 2017.

Indexed as

MutationBiomarkers, TumorB-LymphocytesBRCA1 ProteinBRCA2 ProteinBreast NeoplasmsCell Line, TumorDNA Breaks, Double-StrandedDNA Mutational AnalysisEarly Detection of CancerExome SequencingFemaleGenes, p53HumansPhosphorylationProtein TransportBiomarkers, TumorBRCA1 ProteinBRCA2 Protein

Identifiers

PMID28301456
OpenAlexW2597020522

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.