Evidence map›Paper›PMID 28299837›Full record

ArticleJournal of mass spectrometry : JMS2017

MathIOmica-MSViewer: a dynamic viewer for mass spectrometry files for Mathematica.

R Roushangar, G I Mias

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Journal of mass spectrometry : JMS, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

R RoushangarDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, 48824, USA.
G I MiasDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, 48824, USA.ORCID 0000-0002-9083-1216

Funding

Tag-Seq: A Flexible Framework for Highly Multiplexed Reporter AssaysR01HG006785 · NHGRI · BROAD INSTITUTE, INC. · PI MIKKELSEN, TARJEI SIGURD · 2012 to 2014
$1.1M
Integrative Dynamic Omics Profiling: A First Step Towards Personalized MedicineR00HG007065 · NHGRI · MICHIGAN STATE UNIVERSITY · PI MIAS, GEORGE IOANNOU · 2014 to 2016
$745k
Integrative Dynamic Omics Profiling: A First Step Towards Personalized MedicineK99HG007065 · NHGRI · STANFORD UNIVERSITY · PI MIAS, GEORGE IOANNOU · 2013 to 2013
$90k
NHGRI NIH HHS K99 HG007065NHGRI NIH HHS R00 HG007065NHGRI NIH HHS R01 HG006785
6 · The paper itself

Abstract

MathIOmica-MSViewer is an add-on graphical user interface utility for the Mathematica software system which facilitates the visualization and exploration of spectra from open format mass spectrometry files (mzXML and mzML standard community formats). The viewer was designed for simplicity and handling of large mass spectrometry data files. To facilitate searches, users may use search filters for the spectra based on mass to charge ratios and retention times, and visualize precursor spectra associated to a parent spectrum. AVAILABILITY: The viewer is available as a Mathematica notebook (MathIOmica-MSViewer.nb) at https://doi.org/10.5281/zenodo.321385. The software is provided under an MIT License. © 2017 The Authors. Journal of Mass Spectrometry published by John Wiley & Sons, Ltd.

Indexed as

SoftwareMass SpectrometryProteomicsUser-Computer Interfacebioinformaticsdata miningmass spectrometryMathematica

Identifiers

PMID28299837
PMCPMC5435938

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.