Evidence map›Paper›PMID 28299801›Full record

ArticleThe Journal of pathology2017

Bi-allelic alterations in DNA repair genes underpin homologous recombination DNA repair defects in breast cancer.

Robert W Mutter, Nadeem Riaz, Charlotte Ky Ng, Rob Delsite, Salvatore Piscuoglio, Marcia Edelweiss, Luciano G Martelotto, Rita A Sakr, Tari A King, Dilip D Giri and 14 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of pathology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 70 citations in OpenAlex.

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  18. Pathogenesis of Triple-Negative Breast Cancer.Annual review of pathology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 3 institutions in 1 country.

Robert W MutterDepartment of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Nadeem RiazDepartment of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0000-0001-9873-5862
Charlotte Ky NgDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0000-0002-6100-0026
Rob DelsiteDepartment of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Salvatore PiscuoglioDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Marcia EdelweissDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Luciano G MartelottoDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0000-0002-9625-1183
Rita A SakrDepartment of Surgery, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Tari A KingDepartment of Surgery, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Dilip D GiriDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Maria DrobnjakDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Edi BrogiDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Ranjit BindraDepartment of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Giana BernheimDepartment of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Raymond S LimDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Pedro BlecuaDepartment of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Alexis DesrichardHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Dan HigginsonDepartment of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Russell TowersDepartment of Surgery, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Ruomu JiangDepartment of Systems Biology, Harvard Medical School, Boston, MA, USA.
William LeeDepartment of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Britta WeigeltDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Jorge S Reis-FilhoDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Simon N PowellDepartment of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Memorial Sloan Kettering Cancer Center · USHarvard University · USYale New Haven Hospital · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
The Role of CHFR in Tumorigenesis and Paclitaxel-Sensitivity in Breast CancerP50CA116201 · NCI · MAYO CLINIC ROCHESTER · PI PETER C LUCAS · 2005 to 2026
$49.9M
Connections and redundancy in the BRCA1-BRCA2 pathway of homologous recombinationR01CA169306 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI POWELL, SIMON N. · 2013 to 2017
$1.8M
NCATS NIH HHS UL1 TR001863NCI NIH HHS P30 CA008748NCI NIH HHS P50 CA116201NCI NIH HHS R01 CA169306
6 · The paper itself

Abstract

Homologous recombination (HR) DNA repair-deficient (HRD) breast cancers have been shown to be sensitive to DNA repair targeted therapies. Burgeoning evidence suggests that sporadic breast cancers, lacking germline BRCA1/BRCA2 mutations, may also be HRD. We developed a functional ex vivo RAD51-based test to identify HRD primary breast cancers. An integrated approach examining methylation, gene expression, and whole-exome sequencing was employed to ascertain the aetiology of HRD. Functional HRD breast cancers displayed genomic features of lack of competent HR, including large-scale state transitions and specific mutational signatures. Somatic and/or germline genetic alterations resulting in bi-allelic loss-of-function of HR genes underpinned functional HRD in 89% of cases, and were observed in only one of the 15 HR-proficient samples tested. These findings indicate the importance of a comprehensive genetic assessment of bi-allelic alterations in the HR pathway to deliver a precision medicine-based approach to select patients for therapies targeting tumour-specific DNA repair defects. Copyright © 2017 Pathological Society of Great Britain and Ireland. Published by John Wiley & Sons, Ltd.

Indexed as

Recombinational DNA RepairAdultAgedAged, 80 and overBRCA1 ProteinBRCA2 ProteinBreast NeoplasmsBreast Neoplasms, MaleDNA Repair-Deficiency DisordersFemaleGerm-Line MutationHomologous RecombinationHumansLoss of HeterozygosityMaleMiddle AgedBRCA1 ProteinBRCA1 protein, humanBRCA2 ProteinBRCA2 protein, humanRAD51 protein, humanRad51 RecombinaseBRCAnessDNA repairhomologous recombination-deficientmutationRAD51

Identifiers

PMID28299801
PMCPMC5516531
OpenAlexW2595813318

What OpenQuestion holds

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LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.