Evidence map›Paper›PMID 28299240›Full record

ArticleTranslational vision science & technology2017

Validation of the Total Visual Acuity Extraction Algorithm (TOVA) for Automated Extraction of Visual Acuity Data From Free Text, Unstructured Clinical Records.

Douglas M Baughman, Grace L Su, Irena Tsui, Cecilia S Lee, Aaron Y Lee

Abstract read
In one paragraph

Article in Translational vision science & technology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

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0cells of the map it votes in
11citing papers in PubMed
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1 · What the graph read from it

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

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  8. Retinal Detachment After Endophthalmitis: Risk Factors and Outcomes.Clinical ophthalmology (Auckland, N.Z.) · 2021
    Article
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4 · The record

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5 · Who and what money

Authors and funding

5 authors.

Douglas M BaughmanDepartment of Ophthalmology, University of Washington, Seattle, Washington, USA.
Grace L SuLewis Katz School of Medicine, Temple University, Philadelphia, Pennsylvania, USA.
Irena TsuiJules Stein Eye Institute, University of California Los Angeles, Los Angeles, California, USA.
Cecilia S LeeDepartment of Ophthalmology, University of Washington, Seattle, Washington, USA.
Aaron Y LeeDepartment of Ophthalmology, University of Washington, Seattle, Washington, USA.

Funding

The ocular surface microbiome in potentially infectious ophthalmic diseaseK23EY024921 · NEI · UNIVERSITY OF WASHINGTON · PI LEE, CECILIA SUNGMIN · 2015 to 2019
$991k
NEI NIH HHS K23 EY024921
6 · The paper itself

Abstract

purposeWith increasing volumes of electronic health record data, algorithm-driven extraction may aid manual extraction. Visual acuity often is extracted manually in vision research. The total visual acuity extraction algorithm (TOVA) is presented and validated for automated extraction of visual acuity from free text, unstructured clinical notes.

methodsConsecutive inpatient ophthalmology notes over an 8-year period from the University of Washington healthcare system in Seattle, WA were used for validation of TOVA. The total visual acuity extraction algorithm applied natural language processing to recognize Snellen visual acuity in free text notes and assign laterality. The best corrected measurement was determined for each eye and converted to logMAR. The algorithm was validated against manual extraction of a subset of notes.

resultsA total of 6266 clinical records were obtained giving 12,452 data points. In a subset of 644 validated notes, comparison of manually extracted data versus TOVA output showed 95% concordance. Interrater reliability testing gave κ statistics of 0.94 (95% confidence interval [CI], 0.89-0.99), 0.96 (95% CI, 0.94-0.98), 0.95 (95% CI, 0.92-0.98), and 0.94 (95% CI, 0.90-0.98) for acuity numerators, denominators, adjustments, and signs, respectively. Pearson correlation coefficient was 0.983. Linear regression showed an

conclusionsThe total visual acuity extraction algorithm is a novel tool for extraction of visual acuity from free text, unstructured clinical notes and provides an open source method of data extraction. TRANSLATIONAL RELEVANCE: Automated visual acuity extraction through natural language processing can be a valuable tool for data extraction from free text ophthalmology notes.

Indexed as

clinical researchdata miningelectronic health recordsnatural language processingvisual acuity

Identifiers

PMID28299240
PMCPMC5347661

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LicenceCC BY-NC-ND
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.