Evidence map›Paper›PMID 28298629›Full record

ArticleScientific reports2017

Identification and analysis of genes associated with the synthesis of bioactive constituents in Dendrobium officinale using RNA-Seq.

Chenjia Shen, Hong Guo, Hailing Chen, Yujun Shi, Yijun Meng, Jiangjie Lu, Shangguo Feng, Huizhong Wang

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
9.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 113 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Chenjia ShenCollege of Life and Environmental Science, Hangzhou Normal University, Hangzhou, 310036, China.
Hong GuoCollege of Life and Environmental Science, Hangzhou Normal University, Hangzhou, 310036, China.
Hailing ChenDepartment of Geratology, Hangzhou Hospital of Traditional Chinese Medicine, Hangzhou, 310007, China.
Yujun ShiSchool of Foreign Languages, Zhejiang Gongshang University, Hangzhou, 310018, China.
Yijun MengCollege of Life and Environmental Science, Hangzhou Normal University, Hangzhou, 310036, China.
Jiangjie LuCollege of Life and Environmental Science, Hangzhou Normal University, Hangzhou, 310036, China.
Shangguo FengCollege of Life and Environmental Science, Hangzhou Normal University, Hangzhou, 310036, China. shangguo007@126.com.
Huizhong WangCollege of Life and Environmental Science, Hangzhou Normal University, Hangzhou, 310036, China. whz62@163.com.
Hangzhou Normal University · CNHangzhou Hospital of Traditional Chinese Medicine · CNZhejiang Gongshang University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dendrobium officinale L. is an important traditional herb with high commercial value in China. Several bioactive constituents, including polysaccharides and alkaloids, reportedly make major contributions toward the excellent medicinal effect of D. officinale. In this study, the contents of polysaccharides and alkaloids in various organs of D. officinale were measured and compared. We took advantage of transcriptomes from four organs to explore biological mechanisms in the organ-specific distribution of active ingredients in D. officinale. Based on Kyoto Encyclopedia of Genes and Genomes pathways, unigenes related to the enzymes involved in fructose and mannose metabolism and unigenes associated with putative upstream elements of the alkaloid biosynthetic pathway were identified. A large number of candidates, including 35 full-length glycosyltransferase genes and 49 full-length P450 genes, were also identified based on the transcriptome data, and the organ-specific expression pattern of these genes was determined. Furthermore, differential expression of all candidate genes was analyzed in two Dendrobium species, D. nobile L. and D. officinale. The data will supply important clues to exploit useful genes involved in polysaccharide and alkaloid synthesis.

Indexed as

AlkaloidsBiosynthetic PathwaysCytochrome P-450 Enzyme SystemDendrobiumFlowersGene Expression ProfilingGlycosyltransferasesOrgan SpecificityPlant LeavesPlant ProteinsPlant RootsPlant StemsPolysaccharidesSequence Analysis, RNAAlkaloidsCytochrome P-450 Enzyme SystemGlycosyltransferasesPlant ProteinsPolysaccharides

Identifiers

PMID28298629
PMCPMC5412657
OpenAlexW2594788448

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.