ArticleGenome research2017
metaSPAdes: a new versatile metagenomic assembler.
Article in Genome research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT07169123 (Protease Regulation and Impact of Sodium as Mechanisms of Inflammation in IBD), which is not on this map. Cited by 2,561 papers, 2 of them syntheses that pooled it.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Protease Regulation and Impact of Sodium as Mechanisms of Inflammation in IBD
Who cites it
2,561 citing papers in PubMed, 2 syntheses or guidelines pooled it.
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- Marine microbiomes and their expanding role in biotechnological potential: a systematic review.Archives of microbiology · 2026Pooled it
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- CRISPR-Cas immune repertoires as an ecological record of bacterial interactions with mobile genetic elements in the human gut.Gut microbes · 2026Article
- Temporal dynamics of gut biosynthetic gene clusters link persistent colonization and engraftment in fecal microbiota transplantation.Gut microbes · 2026Article
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- Recovering anaerobic bacterial genomes in saliva, tumour and blood whole genome sequencing data from patients with prostate cancer.NPJ biofilms and microbiomes · 2026Article
- MOSHPIT: Accessible, reproducible metagenome data science on the QIIME 2 framework.Cell genomics · 2026Article
- Fast and accurate taxonomic domain assignment of short metagenomic reads using BBERT.Nucleic acids research · 2026Article
- New purple sulfur bacteria genomes from Nebraska salt marsh enrichments.Microbiology resource announcements · 2026Article
- Metagenome-assembled genomes fromMicrobiology resource announcements · 2026Article
- Optimizing a culture-enriched hybrid metagenomics pipeline to assess the AMR footprint of livestock manure in anaerobic digestate.Microbiology spectrum · 2026Article
- In situ evidence of tiered adaptations buffering a chemosynthetic clam holobiont against environmental sulfide fluctuations.Science advances · 2026Article
- Mitogenome structure and phylogenomics of the order Thoreales (Nemaliophycidae, Rhodophyta).Journal of phycology · 2026Article
2,501 more citing papers are in PubMed but not listed here.
Corrections and comments
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Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
While metagenomics has emerged as a technology of choice for analyzing bacterial populations, the assembly of metagenomic data remains challenging, thus stifling biological discoveries. Moreover, recent studies revealed that complex bacterial populations may be composed from dozens of related strains, thus further amplifying the challenge of metagenomic assembly. metaSPAdes addresses various challenges of metagenomic assembly by capitalizing on computational ideas that proved to be useful in assemblies of single cells and highly polymorphic diploid genomes. We benchmark metaSPAdes against other state-of-the-art metagenome assemblers and demonstrate that it results in high-quality assemblies across diverse data sets.
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