Evidence map›Paper›PMID 28298193›Full record

ArticleBMC medical genetics2017

Identification of two novel mutations in the SLC45A2 gene in a Hungarian pedigree affected by unusual OCA type 4.

Lola Tóth, Beáta Fábos, Katalin Farkas, Adrienn Sulák, Kornélia Tripolszki, Márta Széll, Nikoletta Nagy

Open access · goldAbstract read
In one paragraph

Article in BMC medical genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 32 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Lola TóthDepartment of Medical Genetics, University of Szeged, 6 Somogyi Bela Street, 6720, Szeged, Hungary.
Beáta FábosMór Kaposi Teaching Hospital of the Somogy County, Kaposvár, Hungary.
Katalin FarkasMTA-SZTE Dermatological Research Group, University of Szeged, Szeged, Hungary.
Adrienn SulákDepartment of Medical Genetics, University of Szeged, 6 Somogyi Bela Street, 6720, Szeged, Hungary.
Kornélia TripolszkiDepartment of Medical Genetics, University of Szeged, 6 Somogyi Bela Street, 6720, Szeged, Hungary.
Márta SzéllDepartment of Medical Genetics, University of Szeged, 6 Somogyi Bela Street, 6720, Szeged, Hungary.
Nikoletta NagyDepartment of Medical Genetics, University of Szeged, 6 Somogyi Bela Street, 6720, Szeged, Hungary. nagy.nikoletta@med.u-szeged.hu.
University of Szeged · HUSomogy Megyei Kaposi Mór Oktató Kórház · HU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundOculocutaneous albinism (OCA) is a clinically and genetically heterogenic group of pigmentation abnormalities. OCA type IV (OCA4, OMIM 606574) develops due to homozygous or compound heterozygous mutations in the solute carrier family 45, member 2 (SLC45A2) gene. This gene encodes a membrane-associated transport protein, which regulates tyrosinase activity and, thus, melanin content by changing melanosomal pH and disrupting the incorporation of copper into tyrosinase.

methodsHere we report two Hungarian siblings affected by an unusual OCA4 phenotype. After genomic DNA was isolated from peripheral blood of the patients, the coding regions of the SLC45A2 gene were sequenced. In silico tools were applied to identify the functional impact of the newly detected mutations.

resultsDirect sequencing of the SLC45A2 gene revealed two novel, heterozygous mutations, one missense (c.1226G > A, p.Gly409Asp) and one nonsense (c.1459C > T, p.Gln437*), which were present in both patients, suggesting the mutations were compound heterozygous. In silico tools suggest that these variations are disease causing mutations.

conclusionsThe newly identified mutations may affect the transmembrane domains of the protein, and could impair transport function, resulting in decreases in both melanosomal pH and tyrosinase activity. Our study provides expands on the mutation spectrum of the SLC45A2 gene and the genetic background of OCA4.

Indexed as

Codon, NonsenseMutation, MissenseAdultAlbinism, OculocutaneousAntigens, NeoplasmFemaleHumansHungaryMembrane Transport ProteinsPedigreePhenotypeSequence Analysis, DNAWhite PeopleAntigens, NeoplasmCodon, NonsenseMembrane Transport ProteinsSLC45A2 protein, humanCompound heterozygous stateNovel mutationsOculocutaneous albinism type 4SLC45A2 geneUnusual phenotype

Identifiers

PMID28298193
PMCPMC5353789
OpenAlexW2599052221

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.