Evidence map›Paper›PMID 28297664›Full record

ArticleCell reports2017

Coupling between Protein Stability and Catalytic Activity Determines Pathogenicity of G6PD Variants.

Anna D Cunningham, Alexandre Colavin, Kerwyn Casey Huang, Daria Mochly-Rosen

Abstract read
In one paragraph

Article in Cell reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
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  11. Targeting Apollo-NADPACS sensors · 2022
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  17. Long-range structural defects by pathogenic mutations in most severe glucose-6-phosphate dehydrogenase deficiency.Proceedings of the National Academy of Sciences of the United States of America · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Anna D CunninghamDepartment of Chemical and Systems Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Alexandre ColavinBiophysics Program, Stanford University, Stanford, CA 94305, USA.
Kerwyn Casey HuangBiophysics Program, Stanford University, Stanford, CA 94305, USA; Department of Bioengineering, Stanford University, Stanford, CA 94305, USA; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Daria Mochly-RosenDepartment of Chemical and Systems Biology, Stanford University School of Medicine, Stanford, CA 94305, USA. Electronic address: mochly@stanford.edu.

Funding

TRAINING & OUTREACH COREP50GM107615 · NIGMS · STANFORD UNIVERSITY · PI FERRELL, JAMES E. · 2013 to 2017
$10.9M
Molecular Biophysics Training Program at StanfordT32GM008294 · NIGMS · STANFORD UNIVERSITY · PI HUANG, KERWYN C. · 1989 to 2019
$7.4M
Development of a novel treatment for hyperbilirubinemia-induced kernicterusR01HD084422 · NICHD · STANFORD UNIVERSITY · PI MOCHLY-ROSEN, DARIA, STEVENSON, DAVID K · 2016 to 2020
$1.6M
PSYCHOSTIMULANT EFFECTS: QEEG MEASURES IN ADHD CHILDRENF32HD008442 · NICHD · UNIVERSITY OF COLORADO DENVER · PI LOO, SANDRA K · 1998 to 1999
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NICHD NIH HHS F32 HD008442NICHD NIH HHS R01 HD084422NIGMS NIH HHS P50 GM107615NIGMS NIH HHS T32 GM008294
6 · The paper itself

Abstract

G6PD deficiency, an enzymopathy affecting 7% of the world population, is caused by over 160 identified amino acid variants in glucose-6-phosphate dehydrogenase (G6PD). The clinical presentation of G6PD deficiency is diverse, likely due to the broad distribution of variants across the protein and the potential for multidimensional biochemical effects. In this study, we use bioinformatic and biochemical analyses to interpret the relationship between G6PD variants and their clinical phenotype. Using structural information and statistical analyses of known G6PD variants, we predict the molecular phenotype of five uncharacterized variants from a reference population database. Through multidimensional analysis of biochemical data, we demonstrate that the clinical phenotypes of G6PD variants are largely determined by a trade-off between protein stability and catalytic activity. This work expands the current understanding of the biochemical underpinnings of G6PD variant pathogenicity and suggests a promising avenue for correcting G6PD deficiency by targeting essential structural features of G6PD.

Indexed as

BiocatalysisAmino Acid SubstitutionDatabases, ProteinGlucosephosphate DehydrogenaseHumansModels, MolecularMutationPrincipal Component AnalysisProtein StabilityGlucosephosphate Dehydrogenaseenzyme activityenzymopathyExAC databaseG6PDG6PD deficiencymissense variantsPCAprotein stabilityvariants of unknown significanceVUS

Identifiers

PMID28297664
PMCPMC5396575

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.