Evidence map›Paper›PMID 28297658›Full record

ArticleBiophysical journal2017

Multiscale Modeling of Complex Formation and CD80 Depletion during Immune Synapse Development.

István P Sugár, Jayajit Das, Ciriyam Jayaprakash, Stuart C Sealfon

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. In Vitro Analysis of CTLA-4-Mediated Transendocytosis by Regulatory T Cells.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  3. Article
  4. Article
  5. Agent-Based Modeling of T Cell Receptor Cooperativity.International journal of molecular sciences · 2020
    Article
  6. Review
  7. Article
  8. Article
  9. Description of CD8Journal of immunology research · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

István P SugárDepartment of Neurology, Icahn School of Medicine at Mount Sinai, New York, New York. Electronic address: istvan.sugar@mssm.edu.
Jayajit DasBattelle Center for Mathematical Medicine, The Research Institute at the Nationwide Children's Hospital, and Departments of Pediatrics, Physics, and Biophysics Graduate Program, The Ohio State University, Columbus, Ohio.
Ciriyam JayaprakashDepartment of Physics, Ohio State University, Columbus, Ohio.
Stuart C SealfonDepartment of Neurology, Icahn School of Medicine at Mount Sinai, New York, New York; Center for Advanced Research on Diagnostic Assays, Icahn School of Medicine at Mount Sinai, New York, New York. Electronic address: stuart.sealfon@mssm.edu.
Icahn School of Medicine at Mount Sinai · USNationwide Children's Hospital · USThe Ohio State University · US

Funding

Project I: Immunity to Influenza in Primary Lung Epithelial CellsU19AI117873 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI HAYOT, FERNAND · 2015 to 2019
$8.6M
NIAID NIH HHS U19 AI117873
6 · The paper itself

Abstract

The mechanisms that discriminate self- and foreign antigen before T cell activation are unresolved. As part of the immune system's adaptive response to specific infections or neoplasms, antigen-presenting cells (APC) and effector T cells form transcellular molecular complexes. CTLA4 expression on regulatory or effector T cells reduces T cell activation. The CTLA4 transendocytosis hypothesis proposes that CTLA4 depletes CD80 and CD86 proteins from the APC membrane, rendering the APC incapable of activating T cells. We developed a multiscale spatiotemporal model for the interaction of a T cell and APC. Formation of the immune complex between T cell and APC starts with formation of the transmembrane complexes between the major histocompatibility complex and the T cell receptor (Signal 1) and between CD80 or CD86 and CD28 (Signal 2) at the opposing membrane surfaces of the interacting cells. By 0.01 s after contact simulation, an increasing concentration gradient of the free membrane proteins develops between the opposing surfaces and spherical parts of each cell's membrane, reaching a maximum at ∼30 s. Over several hours, diffusion across the gradient equalizes the free protein concentrations. During this phase, CTLA4 surface expression and its complexation with CD80/CD86 cause internalization and degradation of CD80/CD86. The simulation results show reasonable agreement with reported experimental data and indicate that key molecular processes take place over a very broad timescale, covering five orders of magnitude. Besides the fast complexation reactions, diffusion-limited processes, especially lateral diffusion in cell membranes and geometrical constraints, considerably slow down evolution of the synapse. Our results are consistent with the CTLA4 transendocytosis hypothesis and suggest the importance of lateral diffusion of surface proteins in contributing to a gradual increase in Signal 1 and Signal 2.

Indexed as

Models, BiologicalB7-1 AntigenCTLA-4 AntigenImmunological SynapsesB7-1 AntigenCTLA-4 Antigen

Identifiers

PMID28297658
PMCPMC5355541
OpenAlexW2599372855

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.