Evidence map›Paper›PMID 28296084›Full record

ArticleAmerican journal of medical genetics. Part A2017

De novo loss-of-function variants in STAG2 are associated with developmental delay, microcephaly, and congenital anomalies.

Sureni V Mullegama, Steven D Klein, Milene V Mulatinho, Tharanga Niroshini Senaratne, Kathryn Singh, UCLA Clinical Genomics Center, Dzung C Nguyen, Natalie M Gallant, Samuel P Strom, Shahnaz Ghahremani and 2 more

Open access · greenAbstract readCase Reports
In one paragraph

Article in American journal of medical genetics. Part A, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Novel variants inExperimental and therapeutic medicine · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. A Novel De NovoGenes · 2024
    Article
  11. Article
  12. Article
  13. STAG2: Computational Analysis of Missense Variants Involved in Disease.International journal of molecular sciences · 2024
    Article
  14. International journal of molecular sciences · 2023
    Article
  15. Review
  16. Review
  17. Article
  18. Review
  19. Article
  20. Somatic mosaicism inFrontiers in cell and developmental biology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Sureni V MullegamaDepartment of Pathology and Laboratory Medicine, David Geffen School of Medicine, University of California, Los Angeles, California.
Steven D KleinDepartment of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, California.
Milene V MulatinhoDepartment of Pathology and Laboratory Medicine, David Geffen School of Medicine, University of California, Los Angeles, California.
Tharanga Niroshini SenaratneDepartment of Pathology and Laboratory Medicine, David Geffen School of Medicine, University of California, Los Angeles, California.
Kathryn SinghDivision of Genetic and Genomic Medicine, University of California, Irvine, California.
UCLA Clinical Genomics CenterUCLA Clinical Genomics Center, David Geffen School of Medicine, University of California, Los Angeles, California.
Dzung C NguyenDepartment of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, California.
Natalie M GallantDivision of Genetic and Genomic Medicine, University of California, Irvine, California.
Samuel P StromDepartment of Pathology and Laboratory Medicine, David Geffen School of Medicine, University of California, Los Angeles, California.
Shahnaz GhahremaniDepartment of Radiology, David Geffen School of Medicine at UCLA, Los Angeles, California.
Nagesh P RaoDepartment of Pathology and Laboratory Medicine, David Geffen School of Medicine, University of California, Los Angeles, California.
Julian A Martinez-AgostoUCLA Clinical Genomics Center, David Geffen School of Medicine, University of California, Los Angeles, California.ORCID http://orcid.org/0000-0001-6776-6949
University of California, Los Angeles · USUniversity of California, Irvine · US

Funding

UCLA Clinical and Translational Science InstituteUL1TR000124 · NCATS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DUBINETT, STEVEN M. · 2012 to 2015
$57.0M
Understanding Repetitive Behavior in AutismP50HD055784 · NICHD · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BOOKHEIMER, SUSAN Y · 2007 to 2021
$32.0M
UCLA-Caltech Medical Scientist Training ProgramT32GM008042 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI AJIJOLA, OLUJIMI A, DAWSON, DAVID WAYNE · 1985 to 2023
$29.9M
UCLA Center for Translational Research in Neurodevelopment: UC-TRaNU54HD087101 · NICHD · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MCCRACKEN, JAMES T. · 2016 to 2020
$6.5M
NCATS NIH HHS UL1 TR000124NICHD NIH HHS P50 HD055784NICHD NIH HHS U54 HD087101NIGMS NIH HHS T32 GM008042
6 · The paper itself

Abstract

The cohesin complex is an evolutionarily conserved multi-subunit protein complex which regulates sister chromatid cohesion during mitosis and meiosis. Additionally, the cohesin complex regulates DNA replication, DNA repair, and transcription. The core of the complex consists of four subunits: SMC1A, SMC3, RAD21, and STAG1/2. Loss-of-function mutations in many of these proteins have been implicated in human developmental disorders collectively termed "cohesinopathies." Through clinical exome sequencing (CES) of an 8-year-old girl with a clinical history of global developmental delay, microcephaly, microtia with hearing loss, language delay, ADHD, and dysmorphic features, we describe a heterozygous de novo variant (c.205C>T; p.(Arg69*)) in the integral cohesin structural protein, STAG2. This variant is associated with decreased STAG2 protein expression. The analyses of metaphase spreads did not exhibit premature sister chromatid separation; however, delayed sister chromatid cohesion was observed. To further support the pathogenicity of STAG2 variants, we identified two additional female cases from the DECIPHER research database with mutations in STAG2 and phenotypes similar to our patient. Interestingly, the clinical features of these three cases are remarkably similar to those observed in other well-established cohesinopathies. Herein, we suggest that STAG2 is a dosage-sensitive gene and that heterozygous loss-of-function variants lead to a cohesinopathy.

Indexed as

Antigens, NuclearCell Cycle ProteinsChildChromosomal Proteins, Non-HistoneCohesinsCongenital AbnormalitiesDevelopmental DisabilitiesFemaleGene Expression RegulationHeterozygoteHumansMicrocephalyAntigens, NuclearCell Cycle ProteinsChromosomal Proteins, Non-HistoneCohesinsSTAG2 protein, humancohesin-associated genescohesin complexcohesinopathygene dosageSTAG2X-linked

Identifiers

PMID28296084
PMCPMC7033032
OpenAlexW2594376330

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.