Evidence map›Paper›PMID 28294578›Full record

ArticleInfluenza and other respiratory viruses2017

Rethinking thresholds for serological evidence of influenza virus infection.

Xiahong Zhao, Karen Siegel, Mark I-Cheng Chen, Alex R Cook

Abstract read
In one paragraph

Article in Influenza and other respiratory viruses, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Xiahong ZhaoSaw Swee Hock School of Public Health, National University of Singapore and National University Health System, Singapore.ORCID 0000-0001-9697-4296
Karen SiegelSaw Swee Hock School of Public Health, National University of Singapore and National University Health System, Singapore.
Mark I-Cheng ChenSaw Swee Hock School of Public Health, National University of Singapore and National University Health System, Singapore.
Alex R CookSaw Swee Hock School of Public Health, National University of Singapore and National University Health System, Singapore.ORCID 0000-0002-6271-5832

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionFor pathogens such as influenza that cause many subclinical cases, serologic data can be used to estimate attack rates and the severity of an epidemic in near real time. Current methods for analysing serologic data tend to rely on use of a simple threshold or comparison of titres between pre- and post-epidemic, which may not accurately reflect actual infection rates.

methodsWe propose a method for quantifying infection rates using paired sera and bivariate probit models to evaluate the accuracy of thresholds currently used for influenza epidemics with low and high existing herd immunity levels, and a subsequent non-influenza period. Pre- and post-epidemic sera were taken from a cohort of adults in Singapore (n=838). Bivariate probit models with latent titre levels were fit to the joint distribution of haemagglutination-inhibition assay-determined antibody titres using Markov chain Monte Carlo simulation.

resultsEstimated attack rates were 15% (95% credible interval: 12%-19%) for the first H1N1 pandemic wave. For a large outbreak due to a new strain, a threshold of 1:20 and a twofold rise (if pared sera is available) would result in a more accurate estimate of incidence.

conclusionThe approach presented here offers the basis for a reconsideration of methods used to assess diagnostic tests by both reconsidering the thresholds used and by analysing serological data with a novel statistical model.

Indexed as

Antibodies, ViralHemagglutination Inhibition TestsHumansInfluenza A Virus, H1N1 SubtypeInfluenza, HumanProspective StudiesSingaporeAntibodies, ViralBayesian modellingdiagnostic testsinfluenzalongitudinal multinomial ordinal probit modelpandemic H1N1serologic tests

Identifiers

PMID28294578
PMCPMC5410725

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.