Evidence map›Paper›PMID 28293630›Full record

ArticleBioMed research international2017

Metabolomic Biomarker Identification in Presence of Outliers and Missing Values.

Nishith Kumar, Md Aminul Hoque, Md Shahjaman, S M Shahinul Islam, Md Nurul Haque Mollah

Abstract read
In one paragraph

Article in BioMed research international, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Review
  2. Article
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  5. Article
  6. Article
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  9. Predictive Modeling for Metabolomics Data.Methods in molecular biology (Clifton, N.J.) · 2020
    Article
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  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Nishith KumarBioinformatics Lab, Department of Statistics, Rajshahi University, Rajshahi, Bangladesh; Department of Statistics, Bangabandhu Sheikh Mujibur Rahman Science and Technology University, Gopalganj, Bangladesh.ORCID 0000-0002-1911-4775
Md Aminul HoqueBioinformatics Lab, Department of Statistics, Rajshahi University, Rajshahi, Bangladesh.
Md ShahjamanBioinformatics Lab, Department of Statistics, Rajshahi University, Rajshahi, Bangladesh; Department of Statistics, Begum Rokeya University, Rangpur, Bangladesh.
S M Shahinul IslamInstitute of Biological Sciences, Rajshahi University, Rajshahi, Bangladesh.
Md Nurul Haque MollahBioinformatics Lab, Department of Statistics, Rajshahi University, Rajshahi, Bangladesh.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Metabolomics is the sophisticated and high-throughput technology based on the entire set of metabolites which is known as the connector between genotypes and phenotypes. For any phenotypic changes, potential metabolite (biomarker) identification is very important because it provides diagnostic as well as prognostic markers and can help to develop new biomolecular therapy. Biomarker identification from metabolomics data analysis is hampered by the use of high-throughput technology that provides high dimensional data matrix which contains missing values as well as outliers. However, missing value imputation and outliers handling techniques play important role in identifying biomarker correctly. Although several missing value imputation techniques are available, outliers deteriorate the accuracy of imputation as well as the accuracy of biomarker identification. Therefore, in this paper we have proposed a new biomarker identification technique combining the groupwise robust singular value decomposition,

Indexed as

MetabolomicsAlgorithmsBiomarkers, TumorCarcinoma, HepatocellularComputational BiologyDatabases, FactualFalse Positive ReactionsGas Chromatography-Mass SpectrometryGenetic Association StudiesHumansLiver NeoplasmsModels, StatisticalPrognosisROC CurveBiomarkers, Tumor

Identifiers

PMID28293630
PMCPMC5331169

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.