Evidence map›Paper›PMID 28292943›Full record

ArticleMolecular & cellular proteomics : MCP2017

Molecular Details Underlying Dynamic Structures and Regulation of the Human 26S Proteasome.

Xiaorong Wang, Peter Cimermancic, Clinton Yu, Andreas Schweitzer, Nikita Chopra, James L Engel, Charles Greenberg, Alexander S Huszagh, Florian Beck, Eri Sakata and 12 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
6.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 111 citations in OpenAlex.

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  8. Mapping the interaction surface between CaNature communications · 2025
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7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 7 institutions in 3 countries.

Xiaorong WangFrom the ‡Department of Physiology & Biophysics, University of California, Irvine, Irvine, California 92697.
Peter Cimermancic§Department of Bioengineering and Therapeutic Sciences, Department of Pharmaceutical Chemistry, California Institute for Quantitative Biosciences, University of California, San Francisco, San Francisco, California 94143.
Clinton YuFrom the ‡Department of Physiology & Biophysics, University of California, Irvine, Irvine, California 92697.
Andreas Schweitzer¶Department of Molecular Structural Biology, Max Planck Institute of Biochemistry, Martinsried 82152, Germany.
Nikita Chopra§Department of Bioengineering and Therapeutic Sciences, Department of Pharmaceutical Chemistry, California Institute for Quantitative Biosciences, University of California, San Francisco, San Francisco, California 94143.
James L Engel‖Department of Pharmacology, University of California, San Diego, La Jolla, California, 92093.
Charles Greenberg§Department of Bioengineering and Therapeutic Sciences, Department of Pharmaceutical Chemistry, California Institute for Quantitative Biosciences, University of California, San Francisco, San Francisco, California 94143.
Alexander S HuszaghFrom the ‡Department of Physiology & Biophysics, University of California, Irvine, Irvine, California 92697.
Florian Beck¶Department of Molecular Structural Biology, Max Planck Institute of Biochemistry, Martinsried 82152, Germany.
Eri Sakata¶Department of Molecular Structural Biology, Max Planck Institute of Biochemistry, Martinsried 82152, Germany.
Yingying YangFrom the ‡Department of Physiology & Biophysics, University of California, Irvine, Irvine, California 92697.
Eric J Novitsky**Department of Chemistry, University of California, Irvine, Irvine, California 92697.
Alexander Leitner‡‡Department of Biology, Institute of Molecular Systems Biology, Eidgenössische Technische Hochschule (ETH) Zürich, Zurich, Switzerland.
Paolo Nanni§§Functional Genomics Center Zurich (FGCZ), University of Zurich, ETH Zurich, CH-8057 Zurich, Switzerland.
Abdullah Kahraman¶¶Institute of Molecular Life Sciences, University of Zurich, CH-8057 Zurich, Switzerland.
Xing Guo‖Department of Pharmacology, University of California, San Diego, La Jolla, California, 92093.
Jack E Dixon‖Department of Pharmacology, University of California, San Diego, La Jolla, California, 92093.
Scott D Rychnovsky**Department of Chemistry, University of California, Irvine, Irvine, California 92697.
Ruedi Aebersold‡‡Department of Biology, Institute of Molecular Systems Biology, Eidgenössische Technische Hochschule (ETH) Zürich, Zurich, Switzerland.
Wolfgang Baumeister¶Department of Molecular Structural Biology, Max Planck Institute of Biochemistry, Martinsried 82152, Germany.
Andrej Sali§Department of Bioengineering and Therapeutic Sciences, Department of Pharmaceutical Chemistry, California Institute for Quantitative Biosciences, University of California, San Francisco, San Francisco, California 94143.
Lan HuangFrom the ‡Department of Physiology & Biophysics, University of California, Irvine, Irvine, California 92697; lanhuang@uci.edu.
University of California, Irvine · USMax Planck Institute of Biochemistry · DEUniversity of California San Diego · USETH Zurich · CHQB3 · USUniversity of California, San Francisco · USUniversity of Zurich · CH

Funding

TR&D Project 4. The Imaging Stage: Multiscale Spatiotemporal Modeling of Macromolecular Systems in Cellular NeighborhoodsP41GM109824 · NIGMS · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2014 to 2023
$18.8M
REGULATION OF NEUROPEPTIDE BIOSYNTHESISR01DK018849 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI DIXON, JACK E, WORBY, CAROLYN ANN · 1986 to 2020
$7.0M
Proteomics of the Proteasome Interacting NetworksR01GM074830 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI HUANG, LAN · 2005 to 2022
$6.1M
IMP: Software for Hybrid Determination of Macromolecular Assembly StructuresR01GM083960 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SALI, ANDREJ · 2008 to 2024
$5.2M
Integrative Program in Complex Biological System (ipCBS)T32EB009383 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MARSHALL, WALLACE, WEINER, ORION D · 2009 to 2022
$3.2M
In Vivo Interactome and Dynamics of Cullin-Ring LigasesR01GM106003 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI HUANG, LAN, RYCHNOVSKY, SCOTT D. · 2013 to 2016
$772k
NIBIB NIH HHS T32 EB009383NIDDK NIH HHS R01 DK018849NIGMS NIH HHS P41 GM109824NIGMS NIH HHS R01 GM074830NIGMS NIH HHS R01 GM083960NIGMS NIH HHS R01 GM106003
6 · The paper itself

Abstract

The 26S proteasome is the macromolecular machine responsible for ATP/ubiquitin dependent degradation. As aberration in proteasomal degradation has been implicated in many human diseases, structural analysis of the human 26S proteasome complex is essential to advance our understanding of its action and regulation mechanisms. In recent years, cross-linking mass spectrometry (XL-MS) has emerged as a powerful tool for elucidating structural topologies of large protein assemblies, with its unique capability of studying protein complexes in cells. To facilitate the identification of cross-linked peptides, we have previously developed a robust amine reactive sulfoxide-containing MS-cleavable cross-linker, disuccinimidyl sulfoxide (DSSO). To better understand the structure and regulation of the human 26S proteasome, we have established new DSSO-based

Indexed as

Cell LineHumansModels, MolecularProteasome Endopeptidase ComplexProtein BindingProtein Interaction MappingProtein Interaction MapsReproducibility of ResultsTandem Mass SpectrometryATP dependent 26S proteaseProteasome Endopeptidase Complex

Identifiers

PMID28292943
PMCPMC5417825
OpenAlexW2605676002

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.