Evidence map›Paper›PMID 28292261›Full record

ArticleBMC microbiology2017

Genome-wide analysis of an avirulent strain that induces protective immunity against challenge with virulent Streptococcus suis serotype 2.

Jing Wang, Youjun Feng, Changjun Wang, Feng Zheng, Bachar Hassan, Liming Zhi, Wenjuan Li, Yi Yao, Elaine He, Shibo Jiang and 1 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 2 countries.

Jing WangTranslational Medicine Center, PLA Hospital No. 454, Nanjing, 210002, China. wj6373@hotmail.com.
Youjun FengDepartment of Medical Microbiology and Parasitology, Zhejiang University School of Medicine, Hangzhou, Zhejiang, 310058, China.
Changjun WangDepartment of Epidemiology, Medicinal Research Institute, Nanjing Military Command, Nanjing, 210002, China.
Feng ZhengDepartment of Epidemiology, Medicinal Research Institute, Nanjing Military Command, Nanjing, 210002, China.
Bachar HassanUniversity of North Carolina, Chapel Hill, NC, USA.
Liming ZhiTranslational Medicine Center, PLA Hospital No. 454, Nanjing, 210002, China.
Wenjuan LiTranslational Medicine Center, PLA Hospital No. 454, Nanjing, 210002, China.
Yi YaoTranslational Medicine Center, PLA Hospital No. 454, Nanjing, 210002, China.
Elaine HeThe Warren Alpert Medical School of Brown University, Providence, RI02912, USA.
Shibo JiangLindsley F. Kimball Research Institute, New York Blood Center, New York, NY, 10065, USA.
Jiaqi TangPLA Research Institute of Clinical Laboratory Medicine, Nanjing General Hospital, Nanjing Military Command, Nanjing, 210002, China. tjq85@hotmail.com.
81th Hospital of PLA · CNNanjing General Hospital of Nanjing Military Command · CNBrown University · USNew York Blood Center · USUniversity of North Carolina at Chapel Hill · USZhejiang University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundIt was previously reported in China that two recent large-scale outbreaks of Streptococcus suis serotype 2 (S. suis 2) infections in human were caused by two highly virulent S. suis 2 strains, from which a novel genomic island (GEI), associated with disease onset and progression and designated 89 K, was identified. Here, an avirulent strain, 05HAS68, was isolated from a clinically healthy pig.

resultsBy comparing the genomes of this avirulent strain with virulent strains, it was found that massive genomic rearrangements occurred, resulting in alterations in gene expression that caused enormous single gene gain and loss. Important virulent genes were lost, such as extracellular protein factor (ef) and suilysin (sly) and larger mutants, such as muramidase-released protein (mrp). Piglets vaccinated with the avirulent strain, 05HAS68, had increased TNF-α and IFN-γ levels in the peripheral blood and were fully protected from challenge infection with the most virulent S. suis 2 strain, 05ZYH33. Transfusion of T cells and plasma from vaccinated pigs resulted in protection of recipient animals against the 05ZYH33 challenge.

conclusionThese results suggest that analysis genome of the avirulent strains are instrumental in the development of vaccines and for the functional characterization of important of genetic determinants.

Indexed as

SerogroupAgglutination TestsAnimalsAntigens, BacterialBacterial ProteinsChinaDisease Models, AnimalDNA, BacterialGene Expression Regulation, BacterialGenome, BacterialHemolysin ProteinsInterferon-gammaMaleMicroscopy, Electron, TransmissionProteomeSequence Analysis, DNAAntigens, BacterialBacterial ProteinsDNA, BacterialEpf protein, Streptococcus suisHemolysin ProteinsInterferon-gammaMRP protein, Streptococcus suisProteomeStreptococcal VaccinessuilysinTumor Necrosis Factor-alpha

Identifiers

PMID28292261
PMCPMC5351164
OpenAlexW2602219121

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.