Evidence map›Paper›PMID 28291753›Full record

ArticleActa crystallographica. Section F, Structural biology communications2017

Crystal structure of the type IV secretion system component CagX from Helicobacter pylori.

Jin Zhang, Fei Fan, Yanhe Zhao, Lifang Sun, Yadan Liu, Ronan M Keegan, Michail N Isupov, Yunkun Wu

Abstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. A Proposal for a Consolidated Structural Model of the CagY Protein ofInternational journal of molecular sciences · 2023
    Article
  2. Article
  3. Structure of theeLife · 2019
    Article
  4. mBio · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Jin ZhangState Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Science, Fuzhou 350002, People's Republic of China.
Fei FanFujian Health College, Fuzhou 350101, People's Republic of China.
Yanhe ZhaoState Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Science, Fuzhou 350002, People's Republic of China.
Lifang SunState Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Science, Fuzhou 350002, People's Republic of China.
Yadan LiuState Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Science, Fuzhou 350002, People's Republic of China.
Ronan M KeeganCCP4, Research Complex at Harwell, Rutherford Appleton Laboratory, Harwell Oxford, Didcot OX11 0FA, England.
Michail N IsupovThe Henry Wellcome Building for Biocatalysis, Biosciences, College of Life and Environmental Sciences, University of Exeter, Exeter EX4 4QD, England.
Yunkun WuState Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Science, Fuzhou 350002, People's Republic of China.

Funding

Biotechnology and Biological Sciences Research Council BB/H01330X/1Biotechnology and Biological Sciences Research Council BB/H013652/1
6 · The paper itself

Abstract

Helicobacter pylori, a Gram-negative bacterial pathogen prevalent in the human population, is the causative agent of severe gastric diseases. An H. pylori type IV secretion (T4S) system encoded by the cytotoxin-associated gene pathogenicity island (cagPAI) is responsible for communication with host cells. As a component of the cagPAI T4S system core complex, CagX plays an important role in virulence-protein translocation into the host cells. In this work, the crystal structure of the C-terminal domain of CagX (CagXct), which is a homologue of the VirB9 protein from the VirB/D4 T4S system, is presented. CagXct is only the second three-dimensional structure to be elucidated of a VirB9-like protein. Another homologue, TraO, which is encoded on the Escherichia coli conjugative plasmid pKM101, shares only 19% sequence identity with CagXct; however, there is a remarkable similarity in tertiary structure between these two β-sandwich protein domains. Most of the residues that are conserved between CagXct and TraO are located within the protein core and appear to be responsible for the preservation of this domain fold. The studies presented here will contribute to our understanding of different bacterial T4S systems.

Indexed as

Amino Acid SequenceBacterial ProteinsBinding SitesCloning, MolecularCrystallography, X-RayEscherichia coliEscherichia coli ProteinsGene ExpressionGenomic IslandsHelicobacter pyloriModels, MolecularPlasmidsProtein BindingProtein Conformation, beta-StrandProtein FoldingProtein Interaction Domains and MotifsBacterial ProteinsEscherichia coli ProteinsRecombinant ProteinsTraO protein, E coliType IV Secretion SystemsVirulence FactorscagPAICagXcrystal structurecytotoxin-associated gene pathogenicity islandHelicobacter pyloritype IV secretion systemX-ray diffraction

Identifiers

PMID28291753
PMCPMC5349311

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.