Evidence map›Paper›PMID 28288099›Full record

ArticleNature immunology2017

NLRP12 attenuates colon inflammation by maintaining colonic microbial diversity and promoting protective commensal bacterial growth.

Liang Chen, Justin E Wilson, Mark J Koenigsknecht, Wei-Chun Chou, Stephanie A Montgomery, Agnieszka D Truax, W June Brickey, Christopher D Packey, Nitsan Maharshak, Glenn K Matsushima and 4 more

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Nature immunology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 179 papers.

0numbers the graph read from it
0cells of the map it votes in
179citing papers in PubMed
14.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

179 citing papers in PubMed, 304 citations in OpenAlex.

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119 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 2 countries.

Liang ChenDepartment of Microbiology and Immunology, University of North Carolina, Chapel Hill, North Carolina, USA.
Justin E WilsonLineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, North Carolina, USA.
Mark J KoenigsknechtDepartment of Internal Medicine, Division of Infectious Diseases, University of Michigan, Ann Arbor, Michigan, USA.
Wei-Chun ChouDepartment of Genetics, University of North Carolina, Chapel Hill, North Carolina, USA.
Stephanie A MontgomeryLineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, North Carolina, USA.
Agnieszka D TruaxLineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, North Carolina, USA.
W June BrickeyDepartment of Microbiology and Immunology, University of North Carolina, Chapel Hill, North Carolina, USA.
Christopher D PackeyDivision of Digestive and Liver Diseases, Columbia University Medical Center, New York, New York, USA.
Nitsan MaharshakDepartment of Gastroenterology, Tel-Aviv Sourasky Medical Center, Affiliated to the Sackler Faculty of Medicine, Tel-Aviv University, Tel-Aviv, Israel.
Glenn K MatsushimaDepartment of Microbiology and Immunology, University of North Carolina, Chapel Hill, North Carolina, USA.
Scott E PlevyImmunology Research and Development, Janssen Pharmaceuticals, Spring House, Pennsylvania, USA.
Vincent B YoungDepartment of Internal Medicine, Division of Infectious Diseases, University of Michigan, Ann Arbor, Michigan, USA.
R Balfour SartorCenter for Gastrointestinal Biology and Disease and the Departments of Medicine, of Microbiology and of Immunology, University of North Carolina, Chapel Hill, North Carolina, USA.
Jenny P-Y TingDepartment of Microbiology and Immunology, University of North Carolina, Chapel Hill, North Carolina, USA.
University of North Carolina at Chapel Hill · USUNC Lineberger Comprehensive Cancer CenterUniversity of Michigan–Ann Arbor · USColumbia University Irving Medical Center · USJanssen (United States) · USTel Aviv University · IL

Funding

Virology Research Program (Program 4)P30CA016086 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI David Darr · 1985 to 2026
$201.5M
Somatostatin analogues as countermeasures against intestinal radiation toxicityU19AI067798 · NIAID · DUKE UNIVERSITY · PI CHAO, NELSON J. · 2005 to 2024
$82.1M
PILOT AND FEASIBILITY STUDIESP30DK034987 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ANTHONY BLIKSLAGER · 1985 to 2026
$30.5M
Role of IL-10 in APC Regulation of Protective vs. Pathogenic T Cell Responses toP01DK094779 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SARTOR, RYAN B · 2013 to 2023
$17.9M
National Gnotobiotic Rodent Resource CenterP40OD010995 · OD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Ryan B Sartor · 2012 to 2026
$9.7M
The Interplay Between Host Immunity and Clostridium difficile PathogenesisU19AI090871 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ARONOFF, DAVID M · 2010 to 2014
$7.5M
Plexin-A1: Regulation by CIITA and Immunologic FunctionR37AI029564 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI TING, JENNY P · 2008 to 2017
$3.8M
Colitis, Colon Cancer and the NLR FamilyR01CA156330 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI TING, JENNY P · 2011 to 2019
$3.0M
Interaction of Retinoid X Receptors and NOD-Like Receptors in Colon InflammationF32DK098916 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI TRUAX, AGNIESZKA DOROTA · 2013 to 2015
$132k
NLRP12 Regulation of COX-2 in Colitis and Colon Cancer DevelopmentF32DK088417 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI WILSON, JUSTIN ETHAN · 2010 to 2011
$99k
NCI NIH HHS P30 CA016086NCI NIH HHS R01 CA156330NIAID NIH HHS R37 AI029564NIAID NIH HHS U19 AI067798NIAID NIH HHS U19 AI090871NIDDK NIH HHS F32 DK088417NIDDK NIH HHS F32 DK098916NIDDK NIH HHS P01 DK094779NIDDK NIH HHS P30 DK034987NIH HHS P40 OD010995
6 · The paper itself

Abstract

Inflammatory bowel diseases involve the dynamic interaction of host genetics, the microbiome and inflammatory responses. Here we found lower expression of NLRP12 (which encodes a negative regulator of innate immunity) in human ulcerative colitis, by comparing monozygotic twins and other patient cohorts. In parallel, Nlrp12 deficiency in mice caused increased basal colonic inflammation, which led to a less-diverse microbiome and loss of protective gut commensal strains (of the family Lachnospiraceae) and a greater abundance of colitogenic strains (of the family Erysipelotrichaceae). Dysbiosis and susceptibility to colitis associated with Nlrp12 deficency were reversed equally by treatment with antibodies targeting inflammatory cytokines and by the administration of beneficial commensal Lachnospiraceae isolates. Fecal transplants from mice reared in specific-pathogen-free conditions into germ-free Nlrp12-deficient mice showed that NLRP12 and the microbiome each contributed to immunological signaling that culminated in colon inflammation. These findings reveal a feed-forward loop in which NLRP12 promotes specific commensals that can reverse gut inflammation, while cytokine blockade during NLRP12 deficiency can reverse dysbiosis.

Indexed as

MicrobiotaAnimalsBacillotaBiodiversityColitis, UlcerativeColonDextran SulfateEubacterialesFecesGene-Environment InteractionHumansImmunity, InnateIntracellular Signaling Peptides and ProteinsMiceMice, Inbred C57BLMice, KnockoutDextran SulfateIntracellular Signaling Peptides and ProteinsNLRP12 protein, mouseRNA, Ribosomal, 16S

Identifiers

PMID28288099
PMCPMC5395345
OpenAlexW2596103622

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.