Evidence map›Paper›PMID 28288097›Full record

ArticleNature chemical biology2016

Amino-group carrier-protein-mediated secondary metabolite biosynthesis in Streptomyces.

Fumihito Hasebe, Kenichi Matsuda, Taro Shiraishi, Yushi Futamura, Takeshi Nakano, Takeo Tomita, Ken Ishigami, Hikari Taka, Reiko Mineki, Tsutomu Fujimura and 3 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature chemical biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
4.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Identification of four novelInternational journal of systematic and evolutionary microbiology · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Biosynthesis of 3-thia-α-amino acids on a carrier peptide.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  10. Substrate Recognition by the Peptidyl-(ACS chemical biology · 2022
    Article
  11. Article
  12. Refining and expanding nonribosomal peptide synthetase function and mechanism.Journal of industrial microbiology & biotechnology · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Fumihito HasebeBiotechnology Research Center, The University of Tokyo, Tokyo, Japan.
Kenichi MatsudaBiotechnology Research Center, The University of Tokyo, Tokyo, Japan.
Taro ShiraishiBiotechnology Research Center, The University of Tokyo, Tokyo, Japan.
Yushi FutamuraChemical Biology Research Group, RIKEN Center for Sustainable Resource Science, Wako, Japan.
Takeshi NakanoGene Discovery Research Group, RIKEN Center for Sustainable Resource Science, Wako, Japan.
Takeo TomitaBiotechnology Research Center, The University of Tokyo, Tokyo, Japan.
Ken IshigamiDepartment of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan.
Hikari TakaDivision of Biochemical Analysis, Central Laboratory of Medical Sciences, Juntendo University School of Medicine, Tokyo, Japan.
Reiko MinekiDivision of Biochemical Analysis, Central Laboratory of Medical Sciences, Juntendo University School of Medicine, Tokyo, Japan.
Tsutomu FujimuraDivision of Biochemical Analysis, Central Laboratory of Medical Sciences, Juntendo University School of Medicine, Tokyo, Japan.
Hiroyuki OsadaChemical Biology Research Group, RIKEN Center for Sustainable Resource Science, Wako, Japan.
Tomohisa KuzuyamaBiotechnology Research Center, The University of Tokyo, Tokyo, Japan.
Makoto NishiyamaBiotechnology Research Center, The University of Tokyo, Tokyo, Japan.
The University of Tokyo · JPJuntendo University · JPRIKEN Center for Sustainable Resource Science · JPJapan Science and Technology Agency · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Amino-group carrier proteins (AmCPs) mediate the biosynthesis of lysine and arginine in some bacteria and archaea. Here we demonstrate that an uncharacterized AmCP-mediated biosynthetic system functions to biosynthesize the previously uncharacterized and nonproteinogenic amino acid (2S,6R)-diamino-(5R,7)-dihydroxy-heptanoic acid (DADH) in Streptomyces sp. SANK 60404. DADH is incorporated into a novel peptide metabolite, vazabitide A, featuring an azabicyclo-ring structure, by nonribosomal peptide synthetases and successive modification enzymes in this bacterium. As the AmCP-mediated machinery for DADH biosynthesis is widely distributed in bacteria, further analysis of uncharacterized AmCP-containing gene clusters will lead to the discovery of novel bioactive compounds and novel biosynthetic enzymes.

Indexed as

Secondary MetabolismArginineCarrier ProteinsLysineStreptomycesArginineCarrier ProteinsLysine

Identifiers

PMID28288097
OpenAlexW2527465231

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.