Evidence map›Paper›PMID 28287142›Full record

ArticleScientific reports2017

Worldwide circulation of HSV-2 × HSV-1 recombinant strains.

David M Koelle, Peter Norberg, Matthew P Fitzgibbon, Ronnie M Russell, Alex L Greninger, Meei-Li Huang, Larry Stensland, Lichen Jing, Amalia S Magaret, Kurt Diem and 7 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
9.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 104 citations in OpenAlex.

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  13. Pandemic-scale phylogenetics.bioRxiv : the preprint server for biology · 2021
    Article
  14. Article
  15. Alphaherpesvirus Genomics: Past, Present and Future.Current issues in molecular biology · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 2 countries.

David M KoelleDepartment of Medicine, University of Washington, Seattle, WA 98195, USA.
Peter NorbergDepartment of Infectious Diseases, University of Gothenburg, Guldhedsgatan 10B, 41346, Gothenburg, Sweden.
Matthew P FitzgibbonFred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.
Ronnie M RussellDepartment of Medicine, University of Washington, Seattle, WA 98195, USA.
Alex L GreningerDepartment of Laboratory Medicine, University of Washington, Seattle, WA 98195, USA.
Meei-Li HuangDepartment of Laboratory Medicine, University of Washington, Seattle, WA 98195, USA.
Larry StenslandDepartment of Laboratory Medicine, University of Washington, Seattle, WA 98195, USA.
Lichen JingDepartment of Medicine, University of Washington, Seattle, WA 98195, USA.
Amalia S MagaretDepartment of Laboratory Medicine, University of Washington, Seattle, WA 98195, USA.
Kurt DiemDepartment of Laboratory Medicine, University of Washington, Seattle, WA 98195, USA.
Stacy SelkeDepartment of Laboratory Medicine, University of Washington, Seattle, WA 98195, USA.
Hong XieDepartment of Laboratory Medicine, University of Washington, Seattle, WA 98195, USA.
Connie CelumDepartment of Medicine, University of Washington, Seattle, WA 98195, USA.
Jairam R LingappaDepartment of Medicine, University of Washington, Seattle, WA 98195, USA.
Keith R JeromeDepartment of Laboratory Medicine, University of Washington, Seattle, WA 98195, USA.
Anna WaldDepartment of Medicine, University of Washington, Seattle, WA 98195, USA.
Christine JohnstonDepartment of Medicine, University of Washington, Seattle, WA 98195, USA.
University of Washington · USFred Hutch Cancer Center · USUniversity of Gothenburg · SE

Funding

University of Washington/Fred Hutch Center for AIDS ResearchP30AI027757 · NIAID · UNIVERSITY OF WASHINGTON · PI Kenneth Sherr · 1988 to 2026
$104.9M
HIV PREVENTION TRIALS NETWORK LEADERSHIP GROUPU01AI046749 · NIAID · FAMILY HEALTH INTERNATIONAL · PI CATES, WILLARD · 1999 to 2005
$73.5M
THE PERINATAL COMPLICATIONS OF ASYMPTOMATIC GENITAL HERPES SIMPLEX VIRUSP01AI030731 · NIAID · UNIVERSITY OF WASHINGTON · PI ZHU, JIA · 1991 to 2017
$34.3M
Acyclovir to Prevent HIV Acquisition in HSV-2+ PersonsU01AI052054 · NIAID · UNIVERSITY OF WASHINGTON · PI CELUM, CONNIE L · 2005 to 2007
$13.6M
Genomic systems approach to measure HSV-1-specific T-cell dominance in humansR01AI094019 · NIAID · UNIVERSITY OF WASHINGTON · PI KOELLE, DAVID M · 2012 to 2016
$1.9M
The gender specific prevalence of multiple strain genital HSV-2 infectionR21AI096058 · NIAID · UNIVERSITY OF WASHINGTON · PI WALD, ANNA · 2012 to 2013
$413k
NIAID NIH HHS P01 AI030731NIAID NIH HHS P30 AI027757NIAID NIH HHS R01 AI094019NIAID NIH HHS R21 AI096058NIAID NIH HHS U01 AI046749NIAID NIH HHS U01 AI052054
6 · The paper itself

Abstract

Homo sapiens harbor two distinct, medically significant species of simplexviruses, herpes simplex virus (HSV)-1 and HSV-2, with estimated divergence 6-8 million years ago (MYA). Unexpectedly, we found that circulating HSV-2 strains can contain HSV-1 DNA segments in three distinct genes. Using over 150 genital swabs from North and South America and Africa, we detected recombinants worldwide. Common, widely distributed gene UL39 genotypes are parsimoniously explained by an initial >457 basepair (bp) HSV-1 × HSV-2 crossover followed by back-recombination to HSV-2. Blocks of >244 and >539 bp of HSV-1 DNA within genes UL29 and UL30, respectively, have reached near fixation, with a minority of strains retaining sequences we posit as ancestral HSV-2. Our data add to previous in vitro and animal work, implying that in vivo cellular co-infection with HSV-1 and HSV-2 yields viable interspecies recombinants in the natural human host.

Indexed as

Recombination, GeneticAfricaFemaleGenotypeHerpes SimplexHerpesvirus 1, HumanHerpesvirus 2, HumanHumansMaleNorth AmericaPhylogenySouth America

Identifiers

PMID28287142
PMCPMC5347006
OpenAlexW2596987493

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.