Evidence map›Paper›PMID 28283553›Full record

ArticleArchives of disease in childhood. Fetal and neonatal edition2017

Genome-wide association study of sepsis in extremely premature infants.

Lakshmi Srinivasan, Grier Page, Haresh Kirpalani, Jeffrey C Murray, Abhik Das, Rosemary D Higgins, Waldemar A Carlo, Edward F Bell, Ronald N Goldberg, Kurt Schibler and 16 more

Open access · greenAbstract read
In one paragraph

Article in Archives of disease in childhood. Fetal and neonatal edition, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 40 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. The Global Burden of Sepsis and Septic Shock.Epidemiologia (Basel, Switzerland) · 2024
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Frontiers in cell and developmental biology · 2021
    Article
  13. Review
  14. Review
  15. Precision medicine in pediatric sepsis.Current opinion in pediatrics · 2019
    Review
  16. Article
  17. Article
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 14 institutions in 1 country.

Lakshmi SrinivasanDepartment of Pediatrics, The Children's Hospital of Philadelphia and The University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Grier PageSocial, Statistical and Environmental Sciences Unit, RTI International, Research Triangle Park, Research Park, North Carolina, USA.
Haresh KirpalaniDepartment of Pediatrics, The Children's Hospital of Philadelphia and The University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Jeffrey C MurrayDepartment of Pediatrics, University of Iowa, Iowa City, Iowa, USA.
Abhik DasSocial, Statistical and Environmental Sciences Unit, RTI International, Rockville, Maryland, USA.
Rosemary D HigginsEunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, Maryland, USA.
Waldemar A CarloDepartment of Pediatrics, University of Alabama at Birmingham, Birmingham, Alabama, USA.
Edward F BellDepartment of Pediatrics, University of Iowa, Iowa City, Iowa, USA.
Ronald N GoldbergDepartment of Pediatrics, Duke University, Durham, North Carolina, USA.
Kurt SchiblerDepartment of Pediatrics, University of Cincinnati, Cincinnati, Ohio, USA.
Beena G SoodDepartment of Pediatrics, Wayne State University, Detroit, Michigan, USA.
David K StevensonDivision of Neonatal and Developmental Medicine, Department of Pediatrics, Stanford University School of Medicine and Lucile Packard Children's Hospital, Palo Alto, California, USA.
Barbara J StollDepartment of Pediatrics, Children's Healthcare of Atlanta, Emory University School of Medicine, Atlanta, Georgia, USA.
Krisa P Van MeursDivision of Neonatal and Developmental Medicine, Department of Pediatrics, Stanford University School of Medicine and Lucile Packard Children's Hospital, Palo Alto, California, USA.
Karen J JohnsonDepartment of Pediatrics, University of Iowa, Iowa City, Iowa, USA.
Joshua LevySocial, Statistical and Environmental Sciences Unit, RTI International, Research Triangle Park, Research Park, North Carolina, USA.
Scott A McDonaldSocial, Statistical and Environmental Sciences Unit, RTI International, Research Triangle Park, Research Park, North Carolina, USA.
Kristin M Zaterka-BaxterSocial, Statistical and Environmental Sciences Unit, RTI International, Research Triangle Park, Research Park, North Carolina, USA.
Kathleen A KennedyDepartment of Pediatrics, University of Texas Medical School at Houston, Houston, Texas, USA.
Pablo J SánchezDepartment of Pediatrics, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Shahnaz DuaraUniversity of Miami Miller School of Medicine, Miami, Florida, USA.
Michele C WalshDepartment of Pediatrics, Rainbow Babies & Children's Hospital, Case Western Reserve University, Cleveland, Ohio, USA.
Seetha ShankaranDepartment of Pediatrics, Wayne State University, Detroit, Michigan, USA.
James L WynnDepartment of Pediatrics, University of Florida, Gainesville, Florida, USA.ORCID http://orcid.org/0000-0001-7052-4836
C Michael CottenDepartment of Pediatrics, Duke University, Durham, North Carolina, USA.
Eunice Kennedy Shriver National Institute of Child Health and Human Development Neonatal Research Network
RTI International · USUniversity of Iowa · USChildren's Hospital of Philadelphia · USDuke University · USLucile Packard Children's Hospital · USWayne State University · USEmory University · USNational Institutes of Health · USRainbow Babies & Children's Hospital · USThe University of Texas Southwestern Medical Center · USUniversity of Alabama at Birmingham · USUniversity of Cincinnati · USUniversity of Florida · USUniversity of Miami · US

Funding

Neonatal Research Network Data Coordinating Center (DCC)U10HD036790 · NICHD · RESEARCH TRIANGLE INSTITUTE · PI DAS, ABHIK · 2008 to 2017
$62.3M
WORKER PROTECTION AGAINST AIRBORNE INFLUENZA - A PILOT STUDYM01RR007122 · NCRR · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI WASHBURN, LISA K · 1992 to 2010
$35.2M
XOLAIR IN SUBJECTS WITH MODERATE TO SEVERE ATOPIC DERMATITIS WITH FOOD ALLERGYM01RR000070 · NCRR · STANFORD UNIVERSITY · PI MADAN, ASHIMA · 1985 to 2008
$32.4M
UNIVERSITY OF IOWA CTSA FOR PEDIATRIC RESEARCHUL1RR024979 · NCRR · UNIVERSITY OF IOWA · PI ROSENTHAL, GARY E · 2007 to 2011
$31.8M
ZUNI KIDNEY PROJECT STUDY I--POPULATION BASED SURVEY OF RENAL DISEASEM01RR000997 · NCRR · UNIVERSITY OF NEW MEXICO · PI MOSELEY, POPE L · 1985 to 2010
$30.0M
ZOSUQUIDAR TRIHYDROCHLORIDE DURING CONVENTIONAL INDUCTION AND POST-REMISSIONM01RR000750 · NCRR · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI TISDALE, JAMES E. · 1985 to 2008
$25.5M
Zevalin Radioimmunotherapy Using a Modified TreatmentM01RR000032 · NCRR · UNIVERSITY OF SOUTHERN CALIFORNIA · PI RICH, ROBERT R. · 1985 to 2008
$23.6M
Zosuquidar trihydrochloride for acute myeloid leukemia &refractory anemiaM01RR000080 · NCRR · UNIVERSITY HOSPITALS OF CLEVELAND · PI DEARBORN, DORR GELLATLY · 1985 to 2007
$22.2M
Data Ctr for the Cooperative Neonatal Research NetworkU01HD036790 · NICHD · RESEARCH TRIANGLE INSTITUTE · PI DAS, ABHIK · 1998 to 2007
$21.8M
X LINKED NYSTAGMUS SYNDROME WITH FEATURES OF ALBINISMM01RR000039 · NCRR · EMORY UNIVERSITY · PI VACCARINO, VIOLA · 1985 to 2007
$21.3M
XU 40468 IN HYPERCHOLESTEROLEMIAM01RR000633 · NCRR · UT SOUTHWESTERN MEDICAL CENTER · PI JAIN, MAMTA K · 1985 to 2007
$21.0M
VITAMIN K DEFICIENCY IN CHOLESTATIC LIVER DISEASEM01RR008084 · NCRR · CINCINNATI CHILDRENS HOSP MED CTR · PI STRAUSS, ARNOLD W · 1994 to 2009
$20.6M
NCRR NIH HHS M01 RR000030NCRR NIH HHS M01 RR000032NCRR NIH HHS M01 RR000039NCRR NIH HHS M01 RR000070NCRR NIH HHS M01 RR000080NCRR NIH HHS M01 RR000633NCRR NIH HHS M01 RR000750NCRR NIH HHS M01 RR000997NCRR NIH HHS M01 RR006022NCRR NIH HHS M01 RR007122NCRR NIH HHS M01 RR008084NCRR NIH HHS M01 RR016587NCRR NIH HHS UL1 RR024979NHGRI NIH HHS U01 HG004423NICHD NIH HHS R01 HD089939NICHD NIH HHS U01 HD036790NICHD NIH HHS U10 HD021364NICHD NIH HHS U10 HD021373NICHD NIH HHS U10 HD021385NICHD NIH HHS U10 HD021397NICHD NIH HHS U10 HD027851NICHD NIH HHS U10 HD027853NICHD NIH HHS U10 HD027856NICHD NIH HHS U10 HD027871NICHD NIH HHS U10 HD027880NICHD NIH HHS U10 HD027904NICHD NIH HHS U10 HD034216NICHD NIH HHS U10 HD036790NICHD NIH HHS U10 HD040461NICHD NIH HHS U10 HD040492NICHD NIH HHS U10 HD040498NICHD NIH HHS U10 HD040689NICHD NIH HHS U10 HD053109NICHD NIH HHS U10 HD068244NICHD NIH HHS UG1 HD021364NICHD NIH HHS UG1 HD027851NICHD NIH HHS UG1 HD027853NICHD NIH HHS UG1 HD027880NICHD NIH HHS UG1 HD027904NICHD NIH HHS UG1 HD034216NICHD NIH HHS UG1 HD040492NICHD NIH HHS UG1 HD053109NICHD NIH HHS UG1 HD068278NICHD NIH HHS UG1 HD087229NIGMS NIH HHS K08 GM106143
6 · The paper itself

Abstract

objectiveTo identify genetic variants associated with sepsis (early-onset and late-onset) using a genome-wide association (GWA) analysis in a cohort of extremely premature infants. STUDY

designPreviously generated GWA data from the Neonatal Research Network's anonymised genomic database biorepository of extremely premature infants were used for this study. Sepsis was defined as culture-positive early-onset or late-onset sepsis or culture-proven meningitis. Genomic and whole-genome-amplified DNA was genotyped for 1.2 million single-nucleotide polymorphisms (SNPs); 91% of SNPs were successfully genotyped. We imputed 7.2 million additional SNPs. p Values and false discovery rates (FDRs) were calculated from multivariate logistic regression analysis adjusting for gender, gestational age and ancestry. Target statistical value was p<10

resultsData from 757 extremely premature infants were included: 351 infants with sepsis and 406 infants without sepsis. No SNPs reached genome-wide significance levels (5×10

conclusionsNo SNPs met genome-wide significance in this cohort of extremely low birthweight infants; however, areas of potential association and pathways meriting further study were identified.

Indexed as

Genome-Wide Association StudyInfant, Extremely PrematurePolymorphism, Single NucleotideAdaptor Proteins, Signal TransducingATP-Binding Cassette TransportersCohort StudiesEndopeptidasesFemaleForkhead Transcription FactorsGenotypeGTPase-Activating ProteinsHumansInfant, NewbornIon ChannelsMaleMicrofilament ProteinsAdaptor Proteins, Signal TransducingATP-Binding Cassette TransportersELMO1 protein, humanEndopeptidasesForkhead Transcription FactorsFOXL1 protein, humanGTPase-Activating ProteinsIMMP2L protein, humanIon Channelsmesenchyme fork head 1 proteinMicrofilament ProteinsPIEZO2 protein, humanRALBP1 protein, humanVIL1 protein, humanELBWextreme prematurityGeneticsinfection

Identifiers

PMID28283553
PMCPMC5563277
OpenAlexW2591730194

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.