Evidence map›Paper›PMID 28281671›Full record

ArticleScientific reports2017

Visualizing Adsorption of Cyanophage P-SSP7 onto Marine Prochlorococcus.

Kazuyoshi Murata, Qinfen Zhang, Jesús Gerardo Galaz-Montoya, Caroline Fu, Maureen L Coleman, Marcia S Osburne, Michael F Schmid, Matthew B Sullivan, Sallie W Chisholm, Wah Chiu

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 41 citations in OpenAlex.

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  7. Missing Wedge Completion via Unsupervised Learning with Coordinate Networks.International journal of molecular sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Kazuyoshi MurataNational Center for Macromolecular Imaging, Verna and Marrs McLean Dept. of Biochemistry &Molecular Biology, Baylor College of Medicine, Houston, TX, 77030, USA.
Qinfen ZhangNational Center for Macromolecular Imaging, Verna and Marrs McLean Dept. of Biochemistry &Molecular Biology, Baylor College of Medicine, Houston, TX, 77030, USA.
Jesús Gerardo Galaz-MontoyaNational Center for Macromolecular Imaging, Verna and Marrs McLean Dept. of Biochemistry &Molecular Biology, Baylor College of Medicine, Houston, TX, 77030, USA.
Caroline FuNational Center for Macromolecular Imaging, Verna and Marrs McLean Dept. of Biochemistry &Molecular Biology, Baylor College of Medicine, Houston, TX, 77030, USA.
Maureen L ColemanDepartment of Civil and Environmental Engineering, M.I.T., Cambridge, MA, 02139, USA.
Marcia S OsburneDepartment of Civil and Environmental Engineering, M.I.T., Cambridge, MA, 02139, USA.
Michael F SchmidNational Center for Macromolecular Imaging, Verna and Marrs McLean Dept. of Biochemistry &Molecular Biology, Baylor College of Medicine, Houston, TX, 77030, USA.
Matthew B SullivanDepartment of Civil and Environmental Engineering, M.I.T., Cambridge, MA, 02139, USA.
Sallie W ChisholmDepartment of Civil and Environmental Engineering, M.I.T., Cambridge, MA, 02139, USA.
Wah ChiuNational Center for Macromolecular Imaging, Verna and Marrs McLean Dept. of Biochemistry &Molecular Biology, Baylor College of Medicine, Houston, TX, 77030, USA.
Baylor College of Medicine · USMassachusetts Institute of Technology · USSun Yat-sen University · CN

Funding

3 D ELECTRON MICROSCOPY OF MACROMOLECULES (5P41RR002250-27)P41GM103832 · NIGMS · STANFORD UNIVERSITY · PI CHIU, WAH · 2012 to 2019
$15.1M
NIGMS NIH HHS P41 GM103832
6 · The paper itself

Abstract

Marine cyanobacteria perform roughly a quarter of global carbon fixation, and cyanophages that infect them liberate some of this carbon during infection and cell lysis. Studies of the cyanobacterium Prochlorococcus MED4 and its associated cyanophage P-SSP7 have revealed complex gene expression dynamics once infection has begun, but the initial cyanophage-host interactions remain poorly understood. Here, we used single particle cryo-electron tomography (cryo-ET) to investigate cyanophage-host interactions in this model system, based on 170 cyanophage-to-host adsorption events. Subtomogram classification and averaging revealed three main conformations characterized by different angles between the phage tail and the cell surface. Namely, phage tails were (i) parallel to, (ii) ~45 degrees to, or (iii) perpendicular to the cell surface. Furthermore, different conformations of phage tail fibers correlated with the aforementioned orientations of the tails. We also observed density beyond the tail tip in vertically-oriented phages that had penetrated the cell wall, capturing the final stage of adsorption. Together, our data provide a quantitative characterization of the orientation of phages as they adsorb onto cells, and suggest that cyanophages that abut their cellular targets are only transiently in the "perpendicular" orientation required for successful infection.

Indexed as

Virus AttachmentBacteriophagesProchlorococcus

Identifiers

PMID28281671
PMCPMC5345008
OpenAlexW2594000287

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.