Evidence map›Paper›PMID 28280784›Full record

ArticlePrecision medicine2015

The mirror RNA expression pattern in human tissues.

Tameka N Bythwood, Wei Xu, Wenzhi Li, Weinian Rao, Qiling Li, Xue Xue, Jendai Richards, Li Ma, Qing Song

Open access · bronzeAbstract read
In one paragraph

Article in Precision medicine, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 97% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Tameka N BythwoodCardiovascular Research Institute and Department of Medicine, Morehouse School of Medicine, Atlanta, Georgia 30310, USA.
Wei XuCardiovascular Research Institute and Department of Medicine, Morehouse School of Medicine, Atlanta, Georgia 30310, USA; Center for Big Data Science, First Affiliated Hospital of Medical School, Xi'an Jiaotong University, Xi'an, Shaanxi 710061, China.
Wenzhi LiCardiovascular Research Institute and Department of Medicine, Morehouse School of Medicine, Atlanta, Georgia 30310, USA; Center for Big Data Science, First Affiliated Hospital of Medical School, Xi'an Jiaotong University, Xi'an, Shaanxi 710061, China.
Weinian RaoCardiovascular Research Institute and Department of Medicine, Morehouse School of Medicine, Atlanta, Georgia 30310, USA; 4DGenome Inc, Atlanta, Georgia 30033, USA.
Qiling LiCenter for Big Data Science, First Affiliated Hospital of Medical School, Xi'an Jiaotong University, Xi'an, Shaanxi 710061, China.
Xue XueCenter for Big Data Science, First Affiliated Hospital of Medical School, Xi'an Jiaotong University, Xi'an, Shaanxi 710061, China.
Jendai RichardsCardiovascular Research Institute and Department of Medicine, Morehouse School of Medicine, Atlanta, Georgia 30310, USA.
Li MaCardiovascular Research Institute and Department of Medicine, Morehouse School of Medicine, Atlanta, Georgia 30310, USA; 4DGenome Inc, Atlanta, Georgia 30033, USA; Center for Big Data Science, First Affiliated Hospital of Medical School, Xi'an Jiaotong University, Xi'an, Shaanxi 710061, China.
Qing SongCardiovascular Research Institute and Department of Medicine, Morehouse School of Medicine, Atlanta, Georgia 30310, USA; 4DGenome Inc, Atlanta, Georgia 30033, USA; Center for Big Data Science, First Affiliated Hospital of Medical School, Xi'an Jiaotong University, Xi'an, Shaanxi 710061, China.
First Affiliated Hospital of Xi'an Jiaotong University · CNMorehouse School of Medicine · US

Funding

Training the Trainers: Building Institutional Data Science Capacity to Support Health Disparities ResearchU54MD007602 · NIMHD · MOREHOUSE SCHOOL OF MEDICINE · PI Kevin Sean Kimbro · 2018 to 2026
$47.6M
TRANSCRIPTION FACTORS AND PROSTATE CANCERG12RR003034 · NCRR · MOREHOUSE SCHOOL OF MEDICINE · PI ZHAO, XUEYING · 1986 to 2011
$32.4M
Research Desogn and Biostatistics CoreU54MD007588 · NIMHD · MOREHOUSE SCHOOL OF MEDICINE · PI MAYBERRY, ROBERT M · 2012 to 2018
$24.8M
TRANSPLANTATION OF EXOSOMES FROM HYPOXIA-PRECONDITIONED ADIPOSE-DERIVED STEM CELLS PROMOTES ANGIOGENESIS IN ISCHEMIC HEARTG12MD007602 · NIMHD · MOREHOUSE SCHOOL OF MEDICINE · PI BOND, VINCENT C · 2012 to 2017
$18.4M
Minority Health-GRID Network: A Genomics Resource for Health Disparity ResearchRC4MD005964 · NIMHD · MOREHOUSE SCHOOL OF MEDICINE · PI DAVIS, ROBERT LOWELL, NICKERSON, DEBORAH A · 2010 to 2010
$13.3M
Morehouse Cardiovascular Research Center of ExcellenceP50HL117929 · NHLBI · MOREHOUSE SCHOOL OF MEDICINE · PI TAYLOR, HERMAN ALFRED · 2013 to 2018
$6.7M
Determining the Phased Genome SequencesR21HG006173 · NHGRI · MOREHOUSE SCHOOL OF MEDICINE · PI SONG, QING · 2012 to 2013
$389k
Cost-effective and high-throughput chromosomal haplotypingR43HG007621 · NHGRI · 4DGENOME, INC. · PI SONG, QING · 2014 to 2014
$219k
NCRR NIH HHS G12 RR003034NHGRI NIH HHS R21 HG006173NHGRI NIH HHS R43 HG007621NHLBI NIH HHS P50 HL117929NIMHD NIH HHS G12 MD007602NIMHD NIH HHS RC4 MD005964NIMHD NIH HHS U54 MD007588NIMHD NIH HHS U54 MD007602
6 · The paper itself

Abstract

It has been realized in recent years that non-coding RNAs are playing important roles in genome functions and human diseases. Here we developed a new technology and observed a new pattern of gene expression. We observed that over 72% of RNAs in human genome are expressed in forward-reverse pairs, just like mirror images of each other between forward expression and reverse expression; the overview showed that it cannot be simply described as transcript overlapping, so we designated it as mirror expression. Furthermore, we found that the mirror expression is gene-specific and tissue-specific, and less common in the proximal promoter regions. The size of the shadows varies between different genes, different tissues and different classes. The shadow expression is most significant in the Alu element, it was also observed among L1, Simple Repeats and LTR elements, but rare in other repeats such as low-complexity, LINE/L2, DNA and MIRs. Although there is no evidence yet about the relationship of this mirror pattern and double-strand RNA (dsRNA), this new striking pattern provides a new clue and a new direction to unveil the role of RNAs in the genome functions and diseases.

Indexed as

AluantisenseRNA

Identifiers

PMID28280784
PMCPMC5340261
OpenAlexW1822247618

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.