Evidence map›Paper›PMID 28280099›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Discovery of an endogenous Deltaretrovirus in the genome of long-fingered bats (Chiroptera: Miniopteridae).

Helena Farkašová, Tomáš Hron, Jan Pačes, Pavel Hulva, Petr Benda, Robert James Gifford, Daniel Elleder

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
9.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
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  9. Article
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  11. Human endogenous retroviruses in development and disease.Computational and structural biotechnology journal · 2021
    Review
  12. Article
  13. Article
  14. Infectious KoRV-related retroviruses circulating in Australian bats.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Whole-genome comparison of endogenous retrovirus segregation across wild and domestic host species populations.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Helena FarkašováLaboratory of Viral and Cellular Genetics, Institute of Molecular Genetics, The Czech Academy of Sciences, Prague 14220, Czech Republic.
Tomáš HronLaboratory of Viral and Cellular Genetics, Institute of Molecular Genetics, The Czech Academy of Sciences, Prague 14220, Czech Republic.
Jan PačesLaboratory of Genomics and Bioinformatics, Institute of Molecular Genetics, The Czech Academy of Sciences, Prague 14220, Czech Republic.
Pavel HulvaDepartment of Zoology, Charles University, Prague 12844, Czech Republic.
Petr BendaDepartment of Zoology, Charles University, Prague 12844, Czech Republic.
Robert James GiffordMRC-University of Glasgow Centre for Virus Research, Glasgow G12 8TA, United Kingdom daniel.elleder@img.cas.cz robert.gifford@glasgow.ac.uk.ORCID 0000-0003-4028-9884
Daniel EllederLaboratory of Viral and Cellular Genetics, Institute of Molecular Genetics, The Czech Academy of Sciences, Prague 14220, Czech Republic; daniel.elleder@img.cas.cz robert.gifford@glasgow.ac.uk.
Czech Academy of Sciences · CZCharles University · CZMRC University of Glasgow Centre for Virus Research · GBUniversity of Ostrava · CZ

Funding

Medical Research Council MC_UU_12014/12
6 · The paper itself

Abstract

Retroviruses can create endogenous forms on infiltration into the germline cells of their hosts. These forms are then vertically transmitted and can be considered as genetic fossils of ancient viruses. All retrovirus genera, with the exception of deltaretroviruses, have had their representation identified in the host genome as a virus fossil record. Here we describe an endogenous Deltaretrovirus, identified in the germline of long-fingered bats (Miniopteridae). A single, heavily deleted copy of this retrovirus has been found in the genome of miniopterid species, but not in the genomes of the phylogenetically closest bat families, Vespertilionidae and Cistugonidae. Therefore, the endogenization occurred in a time interval between 20 and 45 million years ago. This discovery closes the last major gap in the retroviral fossil record and provides important insights into the history of deltaretroviruses in mammals.

Indexed as

GenomeAnimalsBase SequenceChiropteraConsensus SequenceDeltaretrovirusEndogenous RetrovirusesEvolution, MolecularGenes, ViralGenomicsNucleic Acid ConformationOpen Reading FramesPhylogenyChiropteraDeltaretrovirusesendogenous retroviruses

Identifiers

PMID28280099
PMCPMC5373376
OpenAlexW2594414613

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.