Evidence map›Paper›PMID 28279351›Full record

ArticleNeuron2017

Single-Cell Profiling of an In Vitro Model of Human Interneuron Development Reveals Temporal Dynamics of Cell Type Production and Maturation.

Jennie L Close, Zizhen Yao, Boaz P Levi, Jeremy A Miller, Trygve E Bakken, Vilas Menon, Jonathan T Ting, Abigail Wall, Anne-Rachel Krostag, Elliot R Thomsen and 13 more

Erratum issuedAbstract read
In one paragraph

Article in Neuron, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

23 authors.

Jennie L CloseAllen Institute for Brain Science, Seattle, WA 98109, USA. Electronic address: jenniec@alleninstitute.org.
Zizhen YaoAllen Institute for Brain Science, Seattle, WA 98109, USA.
Boaz P LeviAllen Institute for Brain Science, Seattle, WA 98109, USA.
Jeremy A MillerAllen Institute for Brain Science, Seattle, WA 98109, USA.
Trygve E BakkenAllen Institute for Brain Science, Seattle, WA 98109, USA.
Vilas MenonAllen Institute for Brain Science, Seattle, WA 98109, USA.
Jonathan T TingAllen Institute for Brain Science, Seattle, WA 98109, USA.
Abigail WallAllen Institute for Brain Science, Seattle, WA 98109, USA.
Anne-Rachel KrostagBluebird Bio, Seattle, WA 98102, USA.
Elliot R ThomsenAllen Institute for Brain Science, Seattle, WA 98109, USA.
Angel M NelsonAllen Institute for Cell Science, Seattle, WA 98109, USA.
John K MichAllen Institute for Brain Science, Seattle, WA 98109, USA.
Rebecca D HodgeAllen Institute for Brain Science, Seattle, WA 98109, USA.
Soraya I ShehataAllen Institute for Brain Science, Seattle, WA 98109, USA.
Ian A GlassDepartment of Pediatrics, University of Washington School of Medicine, Seattle, WA 98195, USA.
Susan BortAllen Institute for Brain Science, Seattle, WA 98109, USA.
Nadiya V ShapovalovaAllen Institute for Brain Science, Seattle, WA 98109, USA.
N Kiet NgoAllen Institute for Brain Science, Seattle, WA 98109, USA.
Joshua S GrimleyUniversal Cells, Seattle, WA 98109, USA.
John W PhillipsAllen Institute for Brain Science, Seattle, WA 98109, USA.
Carol L ThompsonAllen Institute for Brain Science, Seattle, WA 98109, USA.
Sharad RamanathanMolecular and Cellular Biology Department, Harvard University, Cambridge, MA 02138, USA.
Ed LeinAllen Institute for Brain Science, Seattle, WA 98109, USA.

Funding

LABORATORY OF DEVELOPMENTAL BIOLOGYR24HD000836 · NICHD · UNIVERSITY OF WASHINGTON · PI Ian Amos Glass · 1995 to 2026
$16.9M
A Road Map to the NeocortexDP1MH099906 · NIMH · HARVARD UNIVERSITY · PI RAMANATHAN, SHARAD · 2012 to 2015
$3.4M
NICHD NIH HHS R24 HD000836NIMH NIH HHS DP1 MH099906
6 · The paper itself

Abstract

GABAergic interneurons are essential for neural circuit function, and their loss or dysfunction is implicated in human neuropsychiatric disease. In vitro methods for interneuron generation hold promise for studying human cellular and functional properties and, ultimately, for therapeutic cell replacement. Here we describe a protocol for generating cortical interneurons from hESCs and analyze the properties and maturation time course of cell types using single-cell RNA-seq. We find that the cell types produced mimic in vivo temporal patterns of neuron and glial production, with immature progenitors and neurons observed early and mature cortical neurons and glial cell types produced late. By comparing the transcriptomes of immature interneurons to those of more mature neurons, we identified genes important for human interneuron differentiation. Many of these genes were previously implicated in neurodevelopmental and neuropsychiatric disorders.

Indexed as

Cell DifferentiationCell MovementCells, CulturedGABAergic NeuronsHumansInterneuronsNerve Tissue ProteinsNeurogenesisNeurogliaSingle-Cell AnalysisTranscription FactorsNerve Tissue ProteinsTranscription Factorshuman cortexinterneuronsMGEsingle-cell RNA-seq

Identifiers

PMID28279351
PMCPMC5480972

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.