Evidence map›Paper›PMID 28279185›Full record

ArticleMicrobial cell factories2017

Constitutively-stressed yeast strains are high-yielding for recombinant Fps1: implications for the translational regulation of an aquaporin.

Stephanie P Cartwright, Richard A J Darby, Debasmita Sarkar, Nicklas Bonander, Stephane R Gross, Mark P Ashe, Roslyn M Bill

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In one paragraph

Article in Microbial cell factories, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

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  2. bioRxiv : the preprint server for biology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Stephanie P CartwrightSchool of Life and Health Sciences, Aston University, Aston Triangle, Birmingham, B4 7ET, UK.
Richard A J DarbySchool of Life and Health Sciences, Aston University, Aston Triangle, Birmingham, B4 7ET, UK.
Debasmita SarkarSchool of Life and Health Sciences, Aston University, Aston Triangle, Birmingham, B4 7ET, UK.
Nicklas BonanderSchool of Life and Health Sciences, Aston University, Aston Triangle, Birmingham, B4 7ET, UK.
Stephane R GrossSchool of Life and Health Sciences, Aston University, Aston Triangle, Birmingham, B4 7ET, UK.
Mark P AsheFaculty of Life Sciences, University of Manchester, Manchester, M13 9PT, UK.
Roslyn M BillSchool of Life and Health Sciences, Aston University, Aston Triangle, Birmingham, B4 7ET, UK. r.m.bill@aston.ac.uk.ORCID http://orcid.org/0000-0003-1331-0852
Aston University · GBGlasgow School of Art · GBUniversity of Manchester · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundWe previously selected four strains of Saccharomyces cerevisiae for their ability to produce the aquaporin Fps1 in sufficient yield for further study. Yields from the yeast strains spt3Δ, srb5Δ, gcn5Δ and yTHCBMS1 (supplemented with 0.5 μg/mL doxycycline) that had been transformed with an expression plasmid containing 249 base pairs of 5' untranslated region (UTR) in addition to the primary FPS1 open reading frame (ORF) were 10-80 times higher than yields from wild-type cells expressing the same plasmid. One of the strains increased recombinant yields of the G protein-coupled receptor adenosine receptor 2a (A

resultsPolysome profiling experiments were used to analyze the translational state of spt3Δ, srb5Δ, gcn5Δ and yTHCBMS1 (supplemented with 0.5 μg/mL doxycycline); all but gcn5Δ were found to exhibit a clear block in translation initiation. Four additional strains with known initiation blocks (rpl31aΔ, rpl22aΔ, ssf1Δ and nop1Δ) also improved the yield of recombinant Fps1 compared to wild-type. Expression of the eukaryotic transcriptional activator GCN4 was increased in spt3Δ, srb5Δ, gcn5Δ and yTHCBMS1 (supplemented with 0.5 μg/mL doxycycline); these four strains also exhibited constitutive phosphorylation of the eukaryotic initiation factor, eIF2α. Both responses are indicative of a constitutively-stressed phenotype. Investigation of the 5'UTR of FPS1 in the expression construct revealed two untranslated ORFs (uORF1 and uORF2) upstream of the primary ORF. Deletion of either uORF1 or uORF1 and uORF2 further improved recombinant yields in our four strains; the highest yields of the uORF deletions were obtained from wild-type cells. Frame-shifting the stop codon of the native uORF (uORF2) so that it extended into the FPS1 ORF did not substantially alter Fps1 yields in spt3Δ or wild-type cells, suggesting that high-yielding strains are able to bypass 5'uORFs in the FPS1 gene via leaky scanning, which is a known stress-response mechanism. Yields of recombinant A

conclusionsRegulation of Fps1 levels in yeast by translational control may be functionally important; the presence of a native uORF (uORF2) may be required to maintain low levels of Fps1 under normal conditions, but higher levels as part of a stress response. Constitutively-stressed yeast strains may be useful high-yielding microbial cell factories for recombinant protein production.

Indexed as

Gene Expression Regulation, Fungal5' Untranslated RegionsAquaporin 1Codon, TerminatorDoxycyclineGenes, FungalGreen Fluorescent ProteinsOpen Reading FramesPeptide Chain Initiation, TranslationalPlasmidsPolyribosomesReceptor, Adenosine A2ARecombinant ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae Proteins5' Untranslated RegionsAquaporin 1Codon, TerminatorDoxycyclineGreen Fluorescent ProteinsReceptor, Adenosine A2ARecombinant ProteinsSaccharomyces cerevisiae ProteinsAquaglyceroporinFps1 regulationLeaky scanningRecombinant proteinSaccharomyces cerevisiaeTranslation initiationUpstream open reading frame

Identifiers

PMID28279185
PMCPMC5345182
OpenAlexW2594163204

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.