Evidence map›Paper›PMID 28279172›Full record

ArticleJournal of neuroinflammation2017

Astrocyte-specific overexpressed gene signatures in response to methamphetamine exposure in vitro.

Nikki Bortell, Liana Basova, Svetlana Semenova, Howard S Fox, Timothy Ravasi, Maria Cecilia G Marcondes

Open access · goldAbstract read
In one paragraph

Article in Journal of neuroinflammation, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
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  12. Methamphetamine Dysregulation of the Central Nervous System and Peripheral Immunity.The Journal of pharmacology and experimental therapeutics · 2021
    Review
  13. Astrocyte-derived TNF and glutamate critically modulate microglia activation by methamphetamine.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2021
    Article
  14. Article
  15. Article
  16. Article
  17. Methamphetamine and Cannabis: A Tale of Two Drugs and their Effects on HIV, Brain, and Behavior.Journal of neuroimmune pharmacology : the official journal of the Society on NeuroImmune Pharmacology · 2020
    Review
  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 6 institutions in 2 countries.

Nikki BortellCellular and Molecular Neurosciences Department, The Scripps Research Institute, La Jolla, CA, 92037, USA.
Liana BasovaCellular and Molecular Neurosciences Department, The Scripps Research Institute, La Jolla, CA, 92037, USA.
Svetlana SemenovaDepartment of Psychiatry, University of California San Diego, San Diego, CA, 92093, USA.
Howard S FoxDepartment of Experimental Pharmacology, University of Nebraska Medical School, Omaha, NE, 68198, USA.
Timothy RavasiKAUST Environmental Epigenetic Program (KEEP), Division of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal, 23955, Kingdom of Saudi Arabia.
Maria Cecilia G MarcondesCellular and Molecular Neurosciences Department, The Scripps Research Institute, La Jolla, CA, 92037, USA. cmarcond@scripps.edu.
King Abdullah University of Science and Technology · SASan Diego Biomedical Research Institute · USScripps Research Institute · USUniversity of California, San Diego · USUniversity of Colorado Denver · USUniversity of Nebraska Medical Center · US

Funding

VirologyP30AI036214 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Maile Ann Young Karris · 1994 to 2026
$78.4M
Translational Methamphetamine AIDS Research Center (TMARC)P50DA026306 · NIDA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ACHIM, CRISTIAN L · 2009 to 2018
$33.9M
Research Pilot Project ProgramP30GM106397 · NIGMS · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI JOHNSON, KEITH R · 2013 to 2017
$4.9M
Methamphetamine and HIV: Defective immunity with CD8 T cell dysfunctionR01DA032513 · NIDA · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI FOX, HOWARD S, SARVETNICK, NORA E · 2011 to 2015
$2.6M
Methamphetamine and HIV interactions in the regulation of glial activationR01DA036164 · NIDA · SCRIPPS RESEARCH INSTITUTE, THE · PI MARCONDES, MARIA CECILIA GARIBALDI · 2013 to 2017
$2.4M
Sirt-1-mediated regulation of NeuroAIDSR21AG054240 · NIA · SCRIPPS RESEARCH INSTITUTE, THE · PI MARCONDES, MARIA CECILIA GARIBALDI · 2017 to 2019
$528k
NIAID NIH HHS P30 AI036214NIA NIH HHS R21 AG054240NIDA NIH HHS P50 DA026306NIDA NIH HHS R01 DA032513NIDA NIH HHS R01 DA036164NIGMS NIH HHS P30 GM106397
6 · The paper itself

Abstract

backgroundAstrocyte activation is one of the earliest findings in the brain of methamphetamine (Meth) abusers. Our goal in this study was to identify the characteristics of the astrocytic acute response to the drug, which may be critical in pathogenic outcomes secondary to the use.

methodsWe developed an integrated analysis of gene expression data to study the acute gene changes caused by the direct exposure to Meth treatment of astrocytes in vitro, and to better understand how astrocytes respond, what are the early molecular markers associated with this response. We examined the literature in search of similar changes in gene signatures that are found in central nervous system disorders.

resultsWe identified overexpressed gene networks represented by genes of an inflammatory and immune nature and that are implicated in neuroactive ligand-receptor interactions. The overexpressed networks are linked to molecules that were highly upregulated in astrocytes by all doses of methamphetamine tested and that could play a role in the central nervous system. The strongest overexpressed signatures were the upregulation of MAP2K5, GPR65, and CXCL5, and the gene networks individually associated with these molecules. Pathway analysis revealed that these networks are involved both in neuroprotection and in neuropathology. We have validated several targets associated to these genes.

conclusionsGene signatures for the astrocytic response to Meth were identified among the upregulated gene pool, using an in vitro system. The identified markers may participate in dysfunctions of the central nervous system but could also provide acute protection to the drug exposure. Further in vivo studies are necessary to establish the role of these gene networks in drug abuse pathogenesis.

Indexed as

AnimalsAstrocytesCells, CulturedGene ExpressionGene Regulatory NetworksMethamphetamineRatsRats, Sprague-DawleyMethamphetamineAstrocytesCentral nervous systemMethamphetamineSystems biology

Identifiers

PMID28279172
PMCPMC5345234
OpenAlexW2593024978

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.