Evidence map›Paper›PMID 28279171›Full record

ArticleBMC plant biology2017

Single amino acid substitutions in the selectivity filter render NbXIP1;1α aquaporin water permeable.

Henry Ampah-Korsah, Yonathan Sonntag, Angelica Engfors, Andreas Kirscht, Per Kjellbom, Urban Johanson

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Insights into the Selectivity Mechanisms of Grapevine NIP Aquaporins.International journal of molecular sciences · 2020
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Henry Ampah-KorsahCenter for Molecular Protein Science, Department of Biochemistry and Structural Biology, Lund University, Box 124, SE-221 00, Lund, Sweden.
Yonathan SonntagCenter for Molecular Protein Science, Department of Biochemistry and Structural Biology, Lund University, Box 124, SE-221 00, Lund, Sweden.
Angelica EngforsCenter for Molecular Protein Science, Department of Biochemistry and Structural Biology, Lund University, Box 124, SE-221 00, Lund, Sweden.
Andreas KirschtCenter for Molecular Protein Science, Department of Biochemistry and Structural Biology, Lund University, Box 124, SE-221 00, Lund, Sweden.
Per KjellbomCenter for Molecular Protein Science, Department of Biochemistry and Structural Biology, Lund University, Box 124, SE-221 00, Lund, Sweden.
Urban JohansonCenter for Molecular Protein Science, Department of Biochemistry and Structural Biology, Lund University, Box 124, SE-221 00, Lund, Sweden. urban.johanson@biochemistry.lu.se.ORCID 0000-0001-8862-128X
Lund University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAquaporins (AQPs) are integral membrane proteins that facilitate transport of water and/or other small neutral solutes across membranes in all forms of life. The X Intrinsic Proteins (XIPs) are the most recently recognized and the least characterized aquaporin subfamily in higher plants. XIP1s have been shown to be impermeable to water but permeable to boric acid, glycerol, hydrogen peroxide and urea. However, uncertainty regarding the determinants for selectivity and lack of an activity that is easy to quantify have hindered functional investigations. In an effort to resolve these issues, we set out to introduce water permeability in Nicotiana benthamiana XIP1;1α (NbXIP1;1α), by exchanging amino acid residues of predicted alternative aromatic/arginine (ar/R) selectivity filters of NbXIP1;1α for residues constituting the water permeable ar/R selectivity filter of AtTIP2;1.

resultsHere, we present functional results regarding the amino acid substitutions in the putative filters as well as deletions in loops C and D of NbXIP1;1α. In addition, homology models were created based on the high resolution X-ray structure of AtTIP2;1 to rationalize the functional properties of wild-type and mutant NbXIP1;1α. Our results favour Thr 246 rather than Val 242 as the residue at the helix 5 position in the ar/R filter of NbXIP1;1α and indicate that the pore is not occluded by the loops when heterologously expressed in Pichia pastoris. Moreover, our results show that a single amino acid substitution in helix 1 (L79G) or in helix 2 (I102H) is sufficient to render NbXIP1;1α water permeable. Most of the functional results can be rationalized from the models based on a combination of aperture and hydrophobicity of the ar/R filter.

conclusionThe water permeable NbXIP1;1α mutants imply that the heterologously expressed proteins are correctly folded and offer means to explore the structural and functional properties of NbXIP1;1α. Our results support that Thr 246 is part of the ar/R filter. Furthermore, we suggest that a salt bridge to an acidic residue in helix 1, conserved among the XIPs in clade B, directs the orientation of the arginine in the ar/R selectivity filter and provides a novel approach to tune the selectivity of AQPs.

Indexed as

Amino Acid SubstitutionAquaporinsArabidopsis ProteinsModels, MolecularMutationNicotianaPichiaPlant ProteinsProtein ConformationSequence DeletionStructural Homology, ProteinWaterAquaporinsArabidopsis ProteinsPlant ProteinsTIP2;1 protein, ArabidopsisWaterBoric acidHomology modelingMajor Intrinsic ProteinsMIPsMutationXIP

Identifiers

PMID28279171
PMCPMC5345251
OpenAlexW2592666875

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.