Evidence map›Paper›PMID 28279152›Full record

ArticleBMC microbiology2017

The altered gut microbiota in adults with cystic fibrosis.

D G Burke, F Fouhy, M J Harrison, M C Rea, P D Cotter, O O'Sullivan, C Stanton, C Hill, F Shanahan, B J Plant and 1 more

Erratum issuedAbstract read
In one paragraph

Article in BMC microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 101 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
101citing papers in PubMed, 4 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

101 citing papers in PubMed, 4 syntheses or guidelines pooled it.

  1. Pooled it
  2. Prebiotics for people with cystic fibrosis.The Cochrane database of systematic reviews · 2023
    Pooled it
  3. Pooled it
  4. Probiotics for people with cystic fibrosis.The Cochrane database of systematic reviews · 2020
    Pooled it
  5. Trial
  6. Trial
  7. Trial
  8. Trial
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. The Gut Microbiome and Metabolomics Profiles of Dust-exposed Rats.Combinatorial chemistry & high throughput screening · 2026
    Article
  16. Article
  17. Article
  18. TheMicroorganisms · 2025
    Review
  19. Article
  20. Article

41 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

D G BurkeTeagasc Food Research Centre, Moorepark, Fermoy, Co, Cork, Ireland.
F FouhyTeagasc Food Research Centre, Moorepark, Fermoy, Co, Cork, Ireland.
M J HarrisonHRB Clinical Research Facility, University College Cork, Cork, Ireland.
M C ReaTeagasc Food Research Centre, Moorepark, Fermoy, Co, Cork, Ireland.
P D CotterTeagasc Food Research Centre, Moorepark, Fermoy, Co, Cork, Ireland.
O O'SullivanTeagasc Food Research Centre, Moorepark, Fermoy, Co, Cork, Ireland.
C StantonTeagasc Food Research Centre, Moorepark, Fermoy, Co, Cork, Ireland.
C HillAPC Microbiome Institute, University College Cork, Cork, Ireland.
F ShanahanAPC Microbiome Institute, University College Cork, Cork, Ireland.
B J PlantAPC Microbiome Institute, University College Cork, Cork, Ireland.
R P RossAPC Microbiome Institute, University College Cork, Cork, Ireland. p.ross@ucc.ie.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCystic Fibrosis (CF) is an autosomal recessive disease that affects the function of a number of organs, principally the lungs, but also the gastrointestinal tract. The manifestations of cystic fibrosis transmembrane conductance regulator (CFTR) dysfunction in the gastrointestinal tract, as well as frequent antibiotic exposure, undoubtedly disrupts the gut microbiota. To analyse the effects of CF and its management on the microbiome, we compared the gut microbiota of 43 individuals with CF during a period of stability, to that of 69 non-CF controls using 454-pyrosequencing of the 16S rRNA gene. The impact of clinical parameters, including antibiotic therapy, on the results was also assessed.

resultsThe CF-associated microbiome had reduced microbial diversity, an increase in Firmicutes and a reduction in Bacteroidetes compared to the non-CF controls. While the greatest number of differences in taxonomic abundances of the intestinal microbiota was observed between individuals with CF and the healthy controls, gut microbiota differences were also reported between people with CF when grouped by clinical parameters including % predicted FEV

conclusionsThis is one of the largest single-centre studies on gut microbiota in stable adults with CF and demonstrates the significantly altered gut microbiota, including reduced microbial diversity seen in CF patients compared to healthy controls. The data show the impact that CF and it's management have on gut microbiota, presenting the opportunity to develop CF specific probiotics to minimise microbiota alterations.

Indexed as

Gastrointestinal MicrobiomeAdministration, IntravenousAdultAgedAged, 80 and overAnti-Bacterial AgentsBacillotaBacteriaBacteroidetesBiodiversityClassificationCystic FibrosisDNA, BacterialFecesFemaleGastrointestinal TractAnti-Bacterial AgentsDNA, BacterialRNA, Ribosomal, 16S454-pyrosequencingAntibiotic therapyCystic fibrosisGut microbiotaMicrobial diversity

Identifiers

PMID28279152
PMCPMC5345154

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.