ArticlePloS one2017
Comparative transcriptome analysis of the different tissues between the cultivated and wild tomato.
Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
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Who cites it
11 citing papers in PubMed, 27 citations in OpenAlex.
- Comparative Transcriptomic Analysis Reveals Domestication and Improvement Patterns of Broomcorn Millet (International journal of molecular sciences · 2024Article
- Transcriptomic Approach for Investigation ofCurrent issues in molecular biology · 2024Article
- Transcriptome Analyses Throughout Chili Pepper Fruit Development Reveal Novel Insights into the Domestication Process.Plants (Basel, Switzerland) · 2021Article
- Comparative analysis of fatty acid metabolism based on transcriptome sequencing of wild and cultivatedPeerJ · 2021Article
- Comparative Analysis between Wild and Cultivated Cucumbers Reveals Transcriptional Changes during Domestication Process.Plants (Basel, Switzerland) · 2020Article
- Review
- Expanding Alternative Splicing Identification by Integrating Multiple Sources of Transcription Data in Tomato.Frontiers in plant science · 2019Article
- Tomato lncRNA23468 functions as a competing endogenous RNA to modulateHorticulture research · 2019Article
- New insights into tomato microRNAs.Scientific reports · 2018Article
- The Occurrence of Seedlessness in Higher Plants; Insights on Roles and Mechanisms of Parthenocarpy.Frontiers in plant science · 2018Article
- Transcriptomic Response of Resistant (PI613981-Frontiers in plant science · 2017Article
Corrections and comments
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Authors and funding
7 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Although domesticated tomato is cultivated by wild tomato, there are a lot of differences between cultivated tomato and wild tomato, such as shape, physiological function and life history. Many studies show that wild tomato has better salt resistance and drought resistance. In addition to, domesticated tomato's fruit is bigger and has more nutritious than wild tomato. The different features are closely related to differentially expressed genes. We identified 126 up-regulated differentially expressed genes and 87 down-regulated differentially expressed genes in cultivated tomato and wild tomato by RNA-Seq. These differentially expressed genes may be associated with salt resistance, drought resistance and fruit nutrition. These differentially expressed genes also further highlight the large-scale reconstruction between wild and cultivated species. In this paper, we mainly study GO enrichment analysis and pathway analysis of the differentially expressed genes. After GO and pathway enrichment analysis, a set of significantly enriched GO annotations and pathways were identified for the differentially expressed genes. What's more, we also identified long non-coding RNAs and mRNAs in the two species and analyzed its essential features. In addition to, we construct a co-expression network of long non-coding RNAs and mRNAs, and annotate mRNAs associated with long non-coding RNAs as target genes, and speculate the regulation function of long non-coding RNAs. In total, our results reveal the effects of artificial and natural selection on tomato's transcript, providing scientific basis for tomato's research in the future.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.