Evidence map›Paper›PMID 28278156›Full record

ArticlePLoS genetics2017

A new mode of DNA binding distinguishes Capicua from other HMG-box factors and explains its mutation patterns in cancer.

Marta Forés, Lucía Simón-Carrasco, Leiore Ajuria, Núria Samper, Sergio González-Crespo, Matthias Drosten, Mariano Barbacid, Gerardo Jiménez

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 62 citations in OpenAlex.

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  12. ThebioRxiv : the preprint server for biology · 2024
    Article
  13. Molecular and therapeutic advancements in Capicua (Frontiers in cell and developmental biology · 2024
    Review
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  15. Review
  16. Noncanonical function of Capicua as a growth termination signal inProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Marta ForésInstitut de Biologia Molecular de Barcelona-CSIC, Barcelona, Spain.
Lucía Simón-CarrascoMolecular Oncology Programme, Centro Nacional de Investigaciones Oncológicas, Madrid, Spain.ORCID 0000-0002-3281-8144
Leiore AjuriaInstitut de Biologia Molecular de Barcelona-CSIC, Barcelona, Spain.ORCID 0000-0001-5375-3370
Núria SamperInstitut de Biologia Molecular de Barcelona-CSIC, Barcelona, Spain.
Sergio González-CrespoInstitut de Biologia Molecular de Barcelona-CSIC, Barcelona, Spain.ORCID 0000-0002-4845-6969
Matthias DrostenMolecular Oncology Programme, Centro Nacional de Investigaciones Oncológicas, Madrid, Spain.ORCID 0000-0002-3205-456X
Mariano BarbacidMolecular Oncology Programme, Centro Nacional de Investigaciones Oncológicas, Madrid, Spain.
Gerardo JiménezInstitut de Biologia Molecular de Barcelona-CSIC, Barcelona, Spain.ORCID 0000-0003-2765-9289
Institut de Biologia Molecular de Barcelona · ESSpanish National Cancer Research Centre · ESInstitució Catalana de Recerca i Estudis Avançats · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

HMG-box proteins, including Sox/SRY (Sox) and TCF/LEF1 (TCF) family members, bind DNA via their HMG-box. This binding, however, is relatively weak and both Sox and TCF factors employ distinct mechanisms for enhancing their affinity and specificity for DNA. Here we report that Capicua (CIC), an HMG-box transcriptional repressor involved in Ras/MAPK signaling and cancer progression, employs an additional distinct mode of DNA binding that enables selective recognition of its targets. We find that, contrary to previous assumptions, the HMG-box of CIC does not bind DNA alone but instead requires a distant motif (referred to as C1) present at the C-terminus of all CIC proteins. The HMG-box and C1 domains are both necessary for binding specific TGAATGAA-like sites, do not function via dimerization, and are active in the absence of cofactors, suggesting that they form a bipartite structure for sequence-specific binding to DNA. We demonstrate that this binding mechanism operates throughout Drosophila development and in human cells, ensuring specific regulation of multiple CIC targets. It thus appears that HMG-box proteins generally depend on auxiliary DNA binding mechanisms for regulating their appropriate genomic targets, but that each sub-family has evolved unique strategies for this purpose. Finally, the key role of C1 in DNA binding also explains the fact that this domain is a hotspot for inactivating mutations in oligodendroglioma and other tumors, while being preserved in oncogenic CIC-DUX4 fusion chimeras associated to Ewing-like sarcomas.

Indexed as

MutationAmino Acid MotifsAmino Acid SequenceAnimalsAnimals, Genetically ModifiedBase SequenceBinding SitesDNADrosophilaDrosophila ProteinsEmbryo, NonmammalianHEK293 CellsHigh Mobility Group ProteinsHMG-Box DomainsHMGB ProteinsHomeodomain Proteinscic protein, DrosophilaDNADrosophila ProteinsDUX4L1 protein, humanHigh Mobility Group ProteinsHMGB ProteinsHomeodomain ProteinsRepressor Proteins

Identifiers

PMID28278156
PMCPMC5344332
OpenAlexW2593497147

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.