Evidence map›Paper›PMID 28275241›Full record

ArticleJournal of human genetics2017

Characterization of contiguous gene deletions in COL4A6 and COL4A5 in Alport syndrome-diffuse leiomyomatosis.

Kandai Nozu, Shogo Minamikawa, Shiro Yamada, Masafumi Oka, Motoko Yanagita, Naoya Morisada, Shuichiro Fujinaga, China Nagano, Yoshimitsu Gotoh, Eihiko Takahashi and 8 more

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Article in Journal of human genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
  2. Collagen IV in Gould syndrome and Alport syndrome.Nature reviews. Nephrology · 2025
    Review
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  6. Review
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  8. A Systematic Review of PathogenicKidney international reports · 2022
    Article
  9. Article
  10. Review
  11. Molecular and Cellular Insights into the Development of Uterine Fibroids.International journal of molecular sciences · 2021
    Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Review
  17. Fusion of theCancer genomics & proteomics
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 9 institutions in 2 countries.

Kandai NozuDepartment of Pediatrics, Kobe University Graduate School of Medicine, Kobe, Japan.
Shogo MinamikawaDepartment of Pediatrics, Kobe University Graduate School of Medicine, Kobe, Japan.
Shiro YamadaDepartment of Pediatrics, Tokai University Oiso Hospital, Kanagawa, Japan.
Masafumi OkaDepartment of Pediatrics, Kobe University Graduate School of Medicine, Kobe, Japan.
Motoko YanagitaDepartment of Nephrology, Kyoto University, Kyoto, Japan.
Naoya MorisadaDepartment of Pediatrics, Kobe University Graduate School of Medicine, Kobe, Japan.
Shuichiro FujinagaDivision of Nephrology, Saitama Children's Medical Center, Saitama City, Saitama, Japan.
China NaganoDepartment of Pediatric Nephrology, Japanese Red Cross Nagoya Daini Hospital, Nagoya, Japan.
Yoshimitsu GotohDepartment of Pediatric Nephrology, Japanese Red Cross Nagoya Daini Hospital, Nagoya, Japan.
Eihiko TakahashiDepartment of Nephrology, Kanagawa Children's Medical Center, Yokohama, Japan.
Takahiro MorishitaDepartment of Pediatrics, University of Occupational and Environmental Health, Fukuoka, Japan.
Tomohiko YamamuraDepartment of Pediatrics, Kobe University Graduate School of Medicine, Kobe, Japan.
Takeshi NinchojiDepartment of Pediatrics, Kobe University Graduate School of Medicine, Kobe, Japan.
Hiroshi KaitoDepartment of Pediatrics, Kobe University Graduate School of Medicine, Kobe, Japan.
Ichiro MoriokaDepartment of Pediatrics, Kobe University Graduate School of Medicine, Kobe, Japan.
Koichi NakanishiDepartment of Pediatrics, Wakayama Medical University, Wakayama, Japan.
Igor VorechovskyUniversity of Southampton Faculty of Medicine, Southampton, UK.
Kazumoto IijimaDepartment of Pediatrics, Kobe University Graduate School of Medicine, Kobe, Japan.
Kobe University · JPJapanese Red Cross Nagoya Daini Hospital · JPKanagawa Children's Medical Center · JPKyoto University · JPSaitama Children's Medical Center · JPShonan Oiso Hospital · JPUniversity of Occupational and Environmental Health Japan · JPUniversity of Southampton · GBWakayama Medical University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Alport syndrome-diffuse leiomyomatosis (AS-DL, OMIM: 308940) is a rare variant of the X-linked Alport syndrome that shows overgrowth of visceral smooth muscles in the gastrointestinal, respiratory and female reproductive tracts in addition to renal symptoms. AS-DL results from deletions that encompass the 5' ends of the COL4A5 and COL4A6 genes, but deletion breakpoints between COL4A5 and COL4A6 have been determined in only four cases. Here, we characterize deletion breakpoints in five AS-DL patients and show a contiguous COL4A6/COL4A5 deletion in each case. We also demonstrate that eight out of nine deletion alleles involved sequences homologous between COL4A5 and COL4A6. Most breakpoints took place in recognizable transposed elements, including long and short interspersed repeats, DNA transposons and long-terminal repeat retrotransposons. Because deletions involved the bidirectional promoter region in each case, we suggest that the occurrence of leiomyomatosis in AS-DL requires inactivation of both genes. Altogether, our study highlights the importance of homologous recombination involving multiple transposed elements for the development of this continuous gene syndrome and other atypical loss-of-function phenotypes.

Indexed as

Gene DeletionBase SequenceCollagen Type IVHumansLeiomyomatosisNephritis, HereditaryCOL4A5 protein, humanCOL4A6 protein, humanCollagen Type IV

Identifiers

PMID28275241
OpenAlexW2594356604

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.