Evidence map›Paper›PMID 28274236›Full record

ArticleVirology journal2017

Isolation and genetic characterization of a novel 2.2.1.2a H5N1 virus from a vaccinated meat-turkeys flock in Egypt.

Ahmed H Salaheldin, Jutta Veits, Hatem S Abd El-Hamid, Timm C Harder, Davud Devrishov, Thomas C Mettenleiter, Hafez M Hafez, Elsayed M Abdelwhab

Open access · goldAbstract readCase Reports
In one paragraph

Article in Virology journal, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 21 citations in OpenAlex.

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  12. Avian influenza overview September - November 2017.EFSA journal. European Food Safety Authority · 2017
    Article
  13. Avian influenza overview October 2016-August 2017.EFSA journal. European Food Safety Authority · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 3 countries.

Ahmed H SalaheldinInstitute of Poultry Diseases, Free University of Berlin, Königsweg 63, 14163, Berlin, Germany.
Jutta VeitsFriedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Suedufer 10, 17493, Insel Riems-Greifswald, Germany.
Hatem S Abd El-HamidFaculty of Veterinary Medicine, Damanhur University, Damanhur, Egypt.
Timm C HarderFriedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Suedufer 10, 17493, Insel Riems-Greifswald, Germany.
Davud DevrishovMoscow State Academy of Veterinary Medicine and Biotechnology, Moscow, Russia.
Thomas C MettenleiterFriedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Suedufer 10, 17493, Insel Riems-Greifswald, Germany.
Hafez M HafezInstitute of Poultry Diseases, Free University of Berlin, Königsweg 63, 14163, Berlin, Germany. hafez@vetmed.fu-berlin.de.
Elsayed M AbdelwhabFriedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Suedufer 10, 17493, Insel Riems-Greifswald, Germany.
Friedrich-Loeffler-Institut · DEAlexandria University · EGDamanhour University · EGFreie Universität Berlin · DEMoscow State Academy of Veterinary Medicine and Biotechnology named after Skryabin · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundVaccination of poultry to control highly pathogenic avian influenza virus (HPAIV) H5N1 is used in several countries. HPAIV H5N1 of clade 2.2.1 which is endemic in Egypt has diversified into two genetic clades. Clade 2.2.1.1 represents antigenic drift variants in vaccinated commercial poultry while clade 2.2.1.2 variants are detected in humans and backyard poultry. Little is known about H5N1 infection in vaccinated turkeys under field conditions. CASE PRESENTATION: Here, we describe an HPAI H5N1 outbreak in a vaccinated meat-turkey flock in Egypt. Birds were vaccinated with inactivated H5N2 and H5N1 vaccines at 8 and 34 days of age, respectively. At 72

conclusionsInfection with HPAIV H5N1 in commercial turkeys resulted in significant morbidity and mortality despite of vaccination using H5 vaccines. The isolated virus showed antigenic drift and clustered in a novel cluster designated here 2.2.1.2a related to viruses in poultry in Israel, Gaza and Egypt. Enforcement of biosecurity and constant update of vaccine virus strains may be helpful to protect vaccinated birds and prevent spillover infection to neighbouring countries.

Indexed as

Disease OutbreaksGenotypeAnimalsAntigens, ViralCluster AnalysisEgyptGenetic DriftGenome, ViralInfluenza A Virus, H5N1 SubtypeInfluenza in BirdsPhylogenyReal-Time Polymerase Chain ReactionReverse Transcriptase Polymerase Chain ReactionSequence Analysis, DNASurvival AnalysisTurkeysAntigens, ViralAvian influenzaClade 2.2.1.2EgyptH5N1Vaccinated turkeysVaccination failure

Identifiers

PMID28274236
PMCPMC5343302
OpenAlexW2593484403

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.