Evidence map›Paper›PMID 28272392›Full record

ArticleScientific reports2017

Protein expression guided chemical profiling of living cells by the simultaneous observation of Raman scattering and anti-Stokes fluorescence emission.

Liang-da Chiu, Taro Ichimura, Takumasa Sekiya, Hiroaki Machiyama, Tomonobu Watanabe, Hideaki Fujita, Takeaki Ozawa, Katsumasa Fujita

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 18 citations in OpenAlex.

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  5. Identifying STEDable BFMolecules (Basel, Switzerland) · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Liang-da ChiuDepartment of Chemistry, the University of Tokyo, Tokyo, Japan.
Taro IchimuraQuantitative Biology Center, RIKEN, Osaka, Japan.
Takumasa SekiyaDepartment of Applied Physics, Osaka University, Osaka, Japan.
Hiroaki MachiyamaImmunology Frontier Research Center, Osaka University, Osaka, Japan.
Tomonobu WatanabeQuantitative Biology Center, RIKEN, Osaka, Japan.
Hideaki FujitaQuantitative Biology Center, RIKEN, Osaka, Japan.
Takeaki OzawaDepartment of Chemistry, the University of Tokyo, Tokyo, Japan.
Katsumasa FujitaDepartment of Applied Physics, Osaka University, Osaka, Japan.
Osaka University · JPThe University of Tokyo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Our current understanding of molecular biology provides a clear picture of how the genome, transcriptome and proteome regulate each other, but how the chemical environment of the cell plays a role in cellular regulation remains much to be studied. Here we show an imaging method using hybrid fluorescence-Raman microscopy that measures the chemical micro-environment associated with protein expression patterns in a living cell. Simultaneous detection of fluorescence and Raman signals, realised by spectrally separating the two modes through the single photon anti-Stokes fluorescence emission of fluorescent proteins, enables the accurate correlation of the chemical fingerprint of a specimen to its physiological state. Subsequent experiments revealed the slight chemical differences that enabled the chemical profiling of mouse embryonic stem cells with and without Oct4 expression. Furthermore, using the fluorescent probe as localisation guide, we successfully analysed the detailed chemical content of cell nucleus and Golgi body. The technique can be further applied to a wide range of biomedical studies for the better understanding of chemical events during biological processes.

Indexed as

MetabolomicsMicroscopy, FluorescenceProteomicsSpectrum Analysis, RamanAnimalsBiomarkersGene ExpressionGenes, ReporterHumansLuminescent ProteinsMiceMolecular ImagingOctamer Transcription Factor-3Recombinant Fusion ProteinsStem CellsBiomarkersLuminescent ProteinsOctamer Transcription Factor-3Recombinant Fusion Proteins

Identifiers

PMID28272392
PMCPMC5341087
OpenAlexW2593411452

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.