Evidence map›Paper›PMID 28272024›Full record

ArticleNanotechnology2017

Multidomain proteins under force.

Jessica Valle-Orero, Jaime Andrés Rivas-Pardo, Ionel Popa

Abstract read
In one paragraph

Article in Nanotechnology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Force-Clamp Rheometry for Characterizing Protein-based Hydrogels.Journal of visualized experiments : JoVE · 2018
    Article
  12. Mechanical Deformation Accelerates Protein Ageing.Angewandte Chemie (International ed. in English) · 2017
    Article
  13. Proteins Breaking Bad: A Free Energy Perspective.The journal of physical chemistry letters · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Jessica Valle-OreroDepartment of Biological Sciences, Columbia University, New York, NY, United States of America.
Jaime Andrés Rivas-PardoDepartment of Biological Sciences, Columbia University, New York, NY, United States of America.
Ionel PopaPhysics Department, University of Wisconsin-Milwaukee, Milwaukee, WI, United States of America.

Funding

Single Molecule Studies of Titin ElasticityR01HL061228 · NHLBI · MAYO CLINIC COLL OF MEDICINE, ROCHESTER · PI FERNANDEZ, JULIO M · 1999 to 2017
$7.4M
Nanomechanics of bacterial adhesionR01GM116122 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI FERNANDEZ, JULIO M · 2015 to 2018
$1.4M
NHLBI NIH HHS R01 HL061228NIGMS NIH HHS R01 GM116122
6 · The paper itself

Abstract

Advancements in single-molecule force spectroscopy techniques such as atomic force microscopy and magnetic tweezers allow investigation of how domain folding under force can play a physiological role. Combining these techniques with protein engineering and HaloTag covalent attachment, we investigate similarities and differences between four model proteins: I10 and I91-two immunoglobulin-like domains from the muscle protein titin, and two α + β fold proteins-ubiquitin and protein L. These proteins show a different mechanical response and have unique extensions under force. Remarkably, when normalized to their contour length, the size of the unfolding and refolding steps as a function of force reduces to a single master curve. This curve can be described using standard models of polymer elasticity, explaining the entropic nature of the measured steps. We further validate our measurements with a simple energy landscape model, which combines protein folding with polymer physics and accounts for the complex nature of tandem domains under force. This model can become a useful tool to help in deciphering the complexity of multidomain proteins operating under force.

Indexed as

ConnectinEntropyMicroscopy, Atomic ForceProtein DomainsProtein EngineeringProtein FoldingRecombinant ProteinsUbiquitinConnectinRecombinant ProteinsUbiquitin

Identifiers

PMID28272024
PMCPMC5533105

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.