Evidence map›Paper›PMID 28270584›Full record

ArticlemBio2017

Viruses in the Oceanic Basement.

Olivia D Nigro, Sean P Jungbluth, Huei-Ting Lin, Chih-Chiang Hsieh, Jaclyn A Miranda, Christopher R Schvarcz, Michael S Rappé, Grieg F Steward

Abstract read
In one paragraph

Article in mBio, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. The Expanding Diversity of Viruses from Extreme Environments.International journal of molecular sciences · 2024
    Review
  5. Diversity ofISME communications · 2024
    Article
  6. Review
  7. Article
  8. Article
  9. Metabolism of the GenusMicroorganisms · 2022
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Phage diversity, genomics and phylogeny.Nature reviews. Microbiology · 2020
    Review
  15. Article
  16. Article
  17. Review
  18. Spindle-shaped viruses infect marine ammonia-oxidizing thaumarchaea.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  19. Bacteriophages in Natural and Artificial Environments.Pathogens (Basel, Switzerland) · 2019
    Review
  20. Bacteriophages of the lower urinary tract.Nature reviews. Urology · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Olivia D NigroDepartment of Oceanography, University of Hawai'i at Mānoa, Honolulu, Hawai'i, USA onigro@hawaii.edu grieg@hawaii.edu.
Sean P JungbluthDepartment of Oceanography, University of Hawai'i at Mānoa, Honolulu, Hawai'i, USA.
Huei-Ting LinDepartment of Oceanography, University of Hawai'i at Mānoa, Honolulu, Hawai'i, USA.
Chih-Chiang HsiehDepartment of Oceanography, University of Hawai'i at Mānoa, Honolulu, Hawai'i, USA.
Jaclyn A MirandaDepartment of Oceanography, University of Hawai'i at Mānoa, Honolulu, Hawai'i, USA.
Christopher R SchvarczDepartment of Oceanography, University of Hawai'i at Mānoa, Honolulu, Hawai'i, USA.
Michael S RappéHawai'i Institute of Marine Biology, University of Hawai'i at Mānoa, Kāne'ohe, Hawai'i, USA.
Grieg F StewardDepartment of Oceanography, University of Hawai'i at Mānoa, Honolulu, Hawai'i, USA onigro@hawaii.edu grieg@hawaii.edu.ORCID 0000-0001-5988-0522

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Microbial life has been detected well into the igneous crust of the seafloor (i.e., the oceanic basement), but there have been no reports confirming the presence of viruses in this habitat. To detect and characterize an ocean basement virome, geothermally heated fluid samples (ca. 60 to 65°C) were collected from 117 to 292 m deep into the ocean basement using seafloor observatories installed in two boreholes (Integrated Ocean Drilling Program [IODP] U1362A and U1362B) drilled in the eastern sediment-covered flank of the Juan de Fuca Ridge. Concentrations of virus-like particles in the fluid samples were on the order of 0.2 × 10

Indexed as

Oceans and SeasArchaeaBacteriaGeologic SedimentsHot SpringsHot TemperatureMetagenomicsMicroscopy, Electron, TransmissionViral LoadVirionViruses

Identifiers

PMID28270584
PMCPMC5340873

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.