Evidence map›Paper›PMID 28270505›Full record

ArticleThe Journal of biological chemistry2017

Essential role of the flexible linker on the conformational equilibrium of bacterial peroxiredoxin reductase for effective regeneration of peroxiredoxin.

Neelagandan Kamariah, Birgit Eisenhaber, Frank Eisenhaber, Gerhard Grüber

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Novel 5-Nitrofuran-Activating Reductase in Escherichia coli.Antimicrobial agents and chemotherapy · 2019
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Neelagandan KamariahFrom the Bioinformatics Institute, Agency for Science, Technology and Research (A*STAR), Singapore 138671.
Birgit EisenhaberFrom the Bioinformatics Institute, Agency for Science, Technology and Research (A*STAR), Singapore 138671.
Frank EisenhaberFrom the Bioinformatics Institute, Agency for Science, Technology and Research (A*STAR), Singapore 138671.
Gerhard GrüberFrom the Bioinformatics Institute, Agency for Science, Technology and Research (A*STAR), Singapore 138671, ggrueber@ntu.edu.sg.
Bioinformatics Institute · SGAgency for Science, Technology and Research · SGNanyang Technological University · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Reactive oxygen species (ROS) can damage DNA, proteins, and lipids, so cells have antioxidant systems that regulate ROS. In many bacteria, a dedicated peroxiredoxin reductase, alkyl hydroperoxide reductase subunit F (AhpF), catalyzes the rapid reduction of the redox-active disulfide center of the antioxidant protein peroxiredoxin (AhpC) to detoxify ROS such as hydrogen peroxide, organic hydroperoxide, and peroxynitrite. AhpF is a flexible multidomain protein that enables a series of electron transfers among the redox centers by accepting reducing equivalents from NADH. A flexible linker connecting the N-terminal domain (NTD) and C-terminal domain (CTD) of AhpF suggests that the enzyme adopts a large-scale domain motion that alternates between the closed and open states to shuttle electrons from the CTD via the NTD to AhpC. Here, we conducted comprehensive mutational, biochemical, and biophysical analyses to gain insights into the role of the flexible linker and the residues critical for the domain motions of

Indexed as

DisulfidesDNA Mutational AnalysisElectronsEscherichia coliEscherichia coli ProteinsHydrogen PeroxideMuramidaseMutationNADOxidation-ReductionOxygenPeroxiredoxinsProtein BindingProtein DomainsProtein MultimerizationReactive Oxygen SpeciesahpC protein, E coliahpF protein, E coliDisulfidesEscherichia coli ProteinsHydrogen PeroxideMuramidaseNADOxygenPeroxiredoxinsReactive Oxygen Speciesantioxidantbioenergeticselectron transferenzyme mechanismflavoproteinprotein structuresmall-angle X-ray scattering (SAXS)

Identifiers

PMID28270505
PMCPMC5399115
OpenAlexW2591823482

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.