Evidence map›Paper›PMID 28270225›Full record

ArticleGenome biology2017

Post-transcriptional regulation of fruit ripening and disease resistance in tomato by the vacuolar protease SlVPE3.

Weihao Wang, Jianghua Cai, Peiwen Wang, Shiping Tian, Guozheng Qin

Open access · goldAbstract read
In one paragraph

Article in Genome biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
13.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 76 citations in OpenAlex.

  1. Methods for Inoculating Botrytis cinerea on Leaves and Fruit.Methods in molecular biology (Clifton, N.J.) · 2027
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  14. Foods (Basel, Switzerland) · 2022
    Review
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  20. Comparative Analysis ofFrontiers in nutrition · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Weihao WangKey Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, No. 20 Nanxincun, Xiangshan, Haidian District, Beijing, 100093, China.
Jianghua CaiKey Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, No. 20 Nanxincun, Xiangshan, Haidian District, Beijing, 100093, China.
Peiwen WangKey Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, No. 20 Nanxincun, Xiangshan, Haidian District, Beijing, 100093, China.
Shiping TianKey Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, No. 20 Nanxincun, Xiangshan, Haidian District, Beijing, 100093, China.
Guozheng QinKey Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, No. 20 Nanxincun, Xiangshan, Haidian District, Beijing, 100093, China. gzqin@ibcas.ac.cn.ORCID 0000-0003-3046-1177
Chinese Academy of Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundProteases represent one of the most abundant classes of enzymes in eukaryotes and are known to play key roles in many biological processes in plants. However, little is known about their functions in fruit ripening and disease resistance, which are unique to flowering plants and required for seed maturation and dispersal. Elucidating the genetic mechanisms of fruit ripening and disease resistance is an important goal given the biological and dietary significance of fruit.

resultsThrough expression profile analyses of genes encoding tomato (Solanum lycopersicum) cysteine proteases, we identify a number of genes whose expression increases during fruit ripening. RNA interference (RNAi)-mediated repression of SlVPE3, a vacuolar protease gene, results in alterations in fruit pigmentation, lycopene biosynthesis, and ethylene production, suggesting that SlVPE3 is necessary for normal fruit ripening. Surprisingly, the SlVPE3 RNAi fruit are more susceptible to the necrotrophic pathogen Botrytis cinerea. Quantitative proteomic analysis identified 314 proteins that differentially accumulate upon SlVPE3 silencing, including proteins associated with fruit ripening and disease resistance. To identify the direct SlVPE3 targets and mechanisms contributing to fungal pathogen resistance, we perform a screening of SlVPE3-interacting proteins using co-immunoprecipitation coupled with mass spectrometry. We show that SlVPE3 is required for the cleavage of the serine protease inhibitor KTI4, which contributes to resistance against the fungal pathogen B. cinerea.

conclusionsOur findings contribute to elucidating gene regulatory networks and mechanisms that control fruit ripening and disease resistance responses.

Indexed as

Gene Expression Regulation, PlantCarrier ProteinsCluster AnalysisDisease ResistanceFruitGene Expression ProfilingGene SilencingGenetic Association StudiesHost-Pathogen InteractionsPeptide HydrolasesPhenotypePlant DiseasesProtein BindingProtein Interaction MappingProteolysisProteomeCarrier ProteinsPeptide HydrolasesProteomeDisease resistanceFruit ripeningProteaseProtease inhibitorQuantitative proteomeRNA interferenceTomatoVacuolar processing enzyme

Identifiers

PMID28270225
PMCPMC5341188
OpenAlexW2594523115

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.