Evidence map›Paper›PMID 28267339›Full record

ArticleThe journal of physical chemistry letters2017

Structural Elucidation of cis/trans Dicaffeoylquinic Acid Photoisomerization Using Ion Mobility Spectrometry-Mass Spectrometry.

Xueyun Zheng, Ryan S Renslow, Mpho M Makola, Ian K Webb, Liulin Deng, Dennis G Thomas, Niranjan Govind, Yehia M Ibrahim, Mwadham M Kabanda, Ian A Dubery and 4 more

Abstract read
In one paragraph

Article in The journal of physical chemistry letters, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
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  8. Evaluation ofJournal of chemical information and modeling · 2019
    Article
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  11. Review
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  14. Article
  15. Article
  16. The evolution of lipidomics through space and time.Biochimica et biophysica acta. Molecular and cell biology of lipids · 2017
    Review
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Xueyun ZhengEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory , Richland, Washington 99354, United States.ORCID http://orcid.org/0000-0001-9782-4521
Ryan S RenslowEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory , Richland, Washington 99354, United States.
Mpho M MakolaDepartment of Biochemistry, University of Johannesburg , P.O. Box 524, Auckland Park 2006, South Africa.
Ian K WebbEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory , Richland, Washington 99354, United States.
Liulin DengEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory , Richland, Washington 99354, United States.
Dennis G ThomasEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory , Richland, Washington 99354, United States.
Niranjan GovindEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory , Richland, Washington 99354, United States.
Yehia M IbrahimEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory , Richland, Washington 99354, United States.ORCID http://orcid.org/0000-0001-6085-193X
Mwadham M Kabanda
Ian A DuberyDepartment of Biochemistry, University of Johannesburg , P.O. Box 524, Auckland Park 2006, South Africa.
Heino M HeymanEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory , Richland, Washington 99354, United States.ORCID http://orcid.org/0000-0003-0941-2506
Richard D SmithEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory , Richland, Washington 99354, United States.ORCID http://orcid.org/0000-0002-2381-2349
Ntakadzeni E MadalaDepartment of Biochemistry, University of Johannesburg , P.O. Box 524, Auckland Park 2006, South Africa.
Erin S BakerEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory , Richland, Washington 99354, United States.ORCID http://orcid.org/0000-0001-5246-2213

Funding

Systems Biology Identifies Restriction Factors for West Nile VirusU19AI106772 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI WATERS, KATRINA M. · 2013 to 2017
$26.1M
Equipment Supplement Request for a Research Resource for Ultra-sensitive High Throughput ProteomicsP41GM103493 · NIGMS · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI SMITH, RICHARD D · 2012 to 2022
$22.6M
Platform Providing Increased Throughput, Sensitivity and Specificity for MetaboloR01ES022190 · NIEHS · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI BAKER, ERIN S · 2012 to 2016
$2.2M
NIAID NIH HHS U19 AI106772NIEHS NIH HHS R01 ES022190NIGMS NIH HHS P41 GM103493
6 · The paper itself

Abstract

Due to the recently uncovered health benefits and anti-HIV activities of dicaffeoylquinic acids (diCQAs), understanding their structures and functions is of great interest for drug discovery efforts. DiCQAs are analytically challenging to identify and quantify since they commonly exist as a diverse mixture of positional and geometric (cis/trans) isomers. In this work, we utilized ion mobility spectrometry coupled with mass spectrometry to separate the various isomers before and after UV irradiation. The experimental collision cross sections were then compared with theoretical structures to differentiate and identify the diCQA isomers. Our analyses found that naturally the diCQAs existed predominantly as trans/trans isomers, but after 3 h of UV irradiation, cis/cis, cis/trans, trans/cis, and trans/trans isomers were all present in the mixture. This is the first report of successful differentiation of cis/trans diCQA isomers individually, which shows the great promise of IMS coupled with theoretical calculations for determining the structure and activity relationships of different isomers in drug discovery studies.

Identifiers

PMID28267339
PMCPMC5627994

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.