Evidence map›Paper›PMID 28266639›Full record

Trial reportScientific reports2017

Molecular outcomes, clinical consequences, and genetic diagnosis of Oculocutaneous Albinism in Pakistani population.

Mohsin Shahzad, Sairah Yousaf, Yar M Waryah, Hadia Gul, Tasleem Kausar, Nabeela Tariq, Umair Mahmood, Muhammad Ali, Muzammil A Khan, Ali M Waryah and 4 more

Open access · goldAbstract readClinical TrialMulticenter Study
In one paragraph

Trial report in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Dopachrome tautomerase variants in patients with oculocutaneous albinism.Genetics in medicine : official journal of the American College of Medical Genetics · 2021
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 10 institutions in 2 countries.

Mohsin ShahzadDepartment of Otorhinolaryngology Head and Neck Surgery, School of Medicine, University of Maryland, Baltimore, MD, USA.
Sairah YousafDepartment of Otorhinolaryngology Head and Neck Surgery, School of Medicine, University of Maryland, Baltimore, MD, USA.
Yar M WaryahMolecular Biology &Genetics Department, Medical Research Center, Liaquat University of Medical &Health Sciences, Jamshoro, Pakistan.
Hadia GulGomal Centre of Biochemistry and Biotechnology, Gomal University, D.I. Khan, Pakistan.
Tasleem KausarInstitute of Molecular Biology &Biotechnology, Bahauddin Zakariya University, Multan, Pakistan.
Nabeela TariqInstitute of Molecular Biology &Biotechnology, Bahauddin Zakariya University, Multan, Pakistan.
Umair MahmoodDepartment of Otorhinolaryngology Head and Neck Surgery, School of Medicine, University of Maryland, Baltimore, MD, USA.
Muhammad AliGovernment College University, Faisalabad, Pakistan.
Muzammil A KhanGomal Centre of Biochemistry and Biotechnology, Gomal University, D.I. Khan, Pakistan.
Ali M WaryahMolecular Biology &Genetics Department, Medical Research Center, Liaquat University of Medical &Health Sciences, Jamshoro, Pakistan.
Rehan S ShaikhInstitute of Molecular Biology &Biotechnology, Bahauddin Zakariya University, Multan, Pakistan.
Saima RiazuddinDepartment of Otorhinolaryngology Head and Neck Surgery, School of Medicine, University of Maryland, Baltimore, MD, USA.
Zubair M AhmedDepartment of Otorhinolaryngology Head and Neck Surgery, School of Medicine, University of Maryland, Baltimore, MD, USA.
University of Washington Center for Mendelian Genomics (UW CMG) Consortium
University of Washington · USUniversity of Maryland, Baltimore · USBaylor College of Medicine · USBahauddin Zakariya University · PKGomal University · PKHudsonAlpha Institute for Biotechnology · USLiaquat University of Medical & Health Sciences · PKUniversity of Michigan–Ann Arbor · USGovernment College University, Faisalabad · PKSeattle Children's Hospital · US

Funding

UW Center for Mendelian GenomicsU54HG006493 · NHGRI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, NICKERSON, DEBORAH A · 2012 to 2015
$20.0M
Baylor-Johns Hopkins Center for Mendelian GeneticsU54HG006542 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2012 to 2015
$15.6M
UW Center for Mendelian GenomicsUM1HG006493 · NHGRI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, LEAL, SUZANNE M · 2016 to 2020
$15.3M
Yale Center for Mendelian GenomicsUM1HG006504 · NHGRI · YALE UNIVERSITY · PI GERSTEIN, MARK BENDER, GUNEL, MURAT · 2016 to 2020
$14.8M
Baylor-Johns Hopkins Center for Mendelian GeneticsUM1HG006542 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2016 to 2020
$14.5M
Yale Center for Mendelian DisordersU54HG006504 · NHGRI · YALE UNIVERSITY · PI GERSTEIN, MARK BENDER, GUNEL, MURAT · 2012 to 2015
$11.0M
Molecular Genetics of nonsyndromic Oculocutaneous AlbinismR56AR065483 · NIAMS · UNIVERSITY OF MARYLAND BALTIMORE · PI AHMED, ZUBAIR M. · 2014 to 2015
$666k
NHGRI NIH HHS U54 HG006493NHGRI NIH HHS U54 HG006504NHGRI NIH HHS U54 HG006542NHGRI NIH HHS UM1 HG006493NHGRI NIH HHS UM1 HG006504NHGRI NIH HHS UM1 HG006542NIAMS NIH HHS R56 AR065483
6 · The paper itself

Abstract

Nonsyndromic oculocutaneous Albinism (nsOCA) is clinically characterized by the loss of pigmentation in the skin, hair, and iris. OCA is amongst the most common causes of vision impairment in children. To date, pathogenic variants in six genes have been identified in individuals with nsOCA. Here, we determined the identities, frequencies, and clinical consequences of OCA alleles in 94 previously unreported Pakistani families. Combination of Sanger and Exome sequencing revealed 38 alleles, including 22 novel variants, segregating with nsOCA phenotype in 80 families. Variants of TYR and OCA2 genes were the most common cause of nsOCA, occurring in 43 and 30 families, respectively. Twenty-two novel variants include nine missense, four splice site, two non-sense, one insertion and six gross deletions. In vitro studies revealed retention of OCA proteins harboring novel missense alleles in the endoplasmic reticulum (ER) of transfected cells. Exon-trapping assays with constructs containing splice site alleles revealed errors in splicing. As eight alleles account for approximately 56% (95% CI: 46.52-65.24%) of nsOCA cases, primarily enrolled from Punjab province of Pakistan, hierarchical strategies for variant detection would be feasible and cost-efficient genetic tests for OCA in families with similar origin. Thus, we developed Tetra-primer ARMS assays for rapid, reliable, reproducible and economical screening of most of these common alleles.

Indexed as

AllelesGene FrequencyMutation, MissenseAlbinism, OculocutaneousFemaleHumansMaleMembrane Transport ProteinsPakistanMembrane Transport ProteinsOCA2 protein, human

Identifiers

PMID28266639
PMCPMC5339803
OpenAlexW2593481976

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.