Evidence map›Paper›PMID 28266541›Full record

ArticleScientific reports2017

ceRNA crosstalk stabilizes protein expression and affects the correlation pattern of interacting proteins.

Araks Martirosyan, Andrea De Martino, Andrea Pagnani, Enzo Marinari

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Cross-Talk Between circRNAs and mRNAs Modulates MiRNA-mediated Circuits and Affects Melanoma Plasticity.Cancer microenvironment : official journal of the International Cancer Microenvironment Society · 2019
    Article
  9. Review
  10. Competing endogenous RNA crosstalk at system level.PLoS computational biology · 2019
    Article
  11. Review
  12. Article
  13. Article
  14. [Research progress of competing endogenous RNA].Sheng wu yi xue gong cheng xue za zhi = Journal of biomedical engineering = Shengwu yixue gongchengxue zazhi · 2017
    Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Araks MartirosyanDipartimento di Fisica, Sapienza Università di Roma, Rome, Italy.
Andrea De MartinoSoft &Living Matter Lab, Istituto di Nanotecnologia (NANOTEC-CNR), Rome, Italy.
Andrea PagnaniHuman Genetics Foundation, Turin, Italy.
Enzo MarinariDipartimento di Fisica, Sapienza Università di Roma, Rome, Italy.
Sapienza University of Rome · ITIstituto di Nanotecnologia · ITItalian institute for Genomic Medicine · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gene expression is a noisy process and several mechanisms, both transcriptional and post-transcriptional, can stabilize protein levels in cells. Much work has focused on the role of miRNAs, showing in particular that miRNA-mediated regulation can buffer expression noise for lowly expressed genes. Here, using in silico simulations and mathematical modeling, we demonstrate that miRNAs can exert a much broader influence on protein levels by orchestrating competition-induced crosstalk between mRNAs. Most notably, we find that miRNA-mediated cross-talk (i) can stabilize protein levels across the full range of gene expression rates, and (ii) modifies the correlation pattern of co-regulated interacting proteins, changing the sign of correlations from negative to positive. The latter feature may constitute a potentially robust signature of the existence of RNA crosstalk induced by endogenous competition for miRNAs in standard cellular conditions.

Indexed as

Epistasis, GeneticGene Expression RegulationRNA InterferenceAlgorithmsCarrier ProteinsGene Regulatory NetworksMicroRNAsModels, BiologicalProtein BindingProtein StabilityRNATranscription, GeneticCarrier ProteinsMicroRNAsRNA

Identifiers

PMID28266541
PMCPMC5339858
OpenAlexW2592298902

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.