Evidence map›Paper›PMID 28265594›Full record

ArticleEnvironmental disease2016

Transcriptional signatures of unfolded protein response implicate the limitation of animal models in pathophysiological studies.

Ze Zheng, Guohui Wang, Li Li, Jeffery Tseng, Fei Sun, Xuequn Chen, Lin Chang, Henry Heng, Kezhong Zhang

Open access · diamondAbstract read
In one paragraph

Article in Environmental disease, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact, top 96% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Ze ZhengCenter for Molecular Medicine and Genetics, Wayne State University School of Medicine, Detroit, MI 48201.
Guohui WangCenter for Molecular Medicine and Genetics, Wayne State University School of Medicine, Detroit, MI 48201; Department of Internal Medicine, The Affiliated Tumor Hospital of Zhengzhou University, Jinshui, Zhengzhou, Henan, China.
Li LiCenter for Molecular Medicine and Genetics, Wayne State University School of Medicine, Detroit, MI 48201.
Jeffery TsengCenter for Molecular Medicine and Genetics, Wayne State University School of Medicine, Detroit, MI 48201.
Fei SunDepartment of Physiology, Wayne State University School of Medicine, Detroit, MI 48201.
Xuequn ChenDepartment of Physiology, Wayne State University School of Medicine, Detroit, MI 48201.
Lin ChangCardiovascular Center, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
Henry HengCenter for Molecular Medicine and Genetics, Wayne State University School of Medicine, Detroit, MI 48201.
Kezhong ZhangCenter for Molecular Medicine and Genetics, Wayne State University School of Medicine, Detroit, MI 48201; Department of Immunology and Microbiology, Wayne State University School of Medicine, Detroit, MI 48201.
Wayne State University · USUniversity of Michigan–Ann Arbor · USZhengzhou University · CN

Funding

Regional Pilot And Feasibility Study Grants ProgramP30DK020572 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Mehboob A Hussain · 2013 to 2026
$24.3M
Regulation of Hepatic Steatosis by an ER Stress-Inducible Transcription Factor CRR01DK090313 · NIDDK · WAYNE STATE UNIVERSITY · PI Kezhong Zhang · 2011 to 2026
$5.0M
Airborne Particulate Matter, Endoplasmic Reticulum Stress and Hepatic Lipid DysreR21ES017829 · NIEHS · WAYNE STATE UNIVERSITY · PI ZHANG, KEZHONG · 2010 to 2011
$442k
Proinsulin ER export and beta cell ER homeostasis in health and diabetesR56DK102039 · NIDDK · WAYNE STATE UNIVERSITY · PI CHEN, XUEQUN · 2015 to 2015
$153k
NIDDK NIH HHS P30 DK020572NIDDK NIH HHS R01 DK090313NIDDK NIH HHS R56 DK102039NIEHS NIH HHS R21 ES017829
6 · The paper itself

Abstract

backgroundThe unfolded protein response (UPR) refers to intracellular stress signaling pathways that protect cells from the stress caused by accumulation of unfolded or misfolded proteins in the endoplasmic reticulum (ER). The UPR signaling is crucially involved in the initiation and progression of a variety of human diseases by modulating transcriptional and translational programs of the stressed cells. In this study, we analyzed the gene expression signatures of primary stress sensors and major mediators of UPR pathways in a variety of tissues/organs of human and murine species.

methodsWe first analyzed protein sequence similarities of major UPR transducers and mediators of human and murine species, and then examined their gene expression profiles in 26 human and mouse common tissues based on the microarray datasets of public domains. The differential expression patterns of the UPR genes in human diseases were delineated. The involvements of the UPR genes in mouse pathology were also analyzed with mouse gene knockout models.

resultsThe results indicated that expression patterns and pathophysiologic involvements of the major UPR stress sensors and mediators significantly differ in 26 common tissues/organs of human and murine species. Gene expression profiles suggest that the IRE1α/XBP1-mediated UPR pathway is induced in secretory and metabolic tissues or organs. While deletion of the UPR trans-activator XBP1 leads to pathological phenotypes in mice, alteration in XBP1 is less associated with human disease conditions.

conclusionsExpression signatures of the major UPR genes differ among tissues or organs and among human and mouse species. The differential induction of the UPR pathways reflects the pathophysiologic differences of tissues or organs. The difference in UPR induction between human and mouse suggests the limitation of using animal models to study human pathophysiology or drugology associated with environmental stress.

Indexed as

Animal modelsendoplasmic reticulum stressenvironmental stresstranscriptional signatureunfolded protein response

Identifiers

PMID28265594
PMCPMC5336312
OpenAlexW2435250870

What OpenQuestion holds

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LicenceCC BY-NC-SA
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.