Evidence map›Paper›PMID 28265118›Full record

SynthesisMolecular psychiatry2017

Risk alleles of genes with monoallelic expression are enriched in gain-of-function variants and depleted in loss-of-function variants for neurodevelopmental disorders.

V Savova, S Vinogradova, D Pruss, A A Gimelbrant, L A Weiss

Open access · greenAbstract readMeta-Analysis
In one paragraph

Synthesis in Molecular psychiatry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
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  3. Review
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  10. The emerging landscape ofF1000Research · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

V SavovaDana-Farber Cancer Institute, Harvard Medical School, Boston, MA, USA.
S VinogradovaDana-Farber Cancer Institute, Harvard Medical School, Boston, MA, USA.
D PrussDana-Farber Cancer Institute, Harvard Medical School, Boston, MA, USA.
A A GimelbrantDana-Farber Cancer Institute, Harvard Medical School, Boston, MA, USA.
L A WeissDepartment of Psychiatry and Institute for Human Genetics, University of California San Francisco, Langley Porter Psychiatric Institute, Nina Ireland Lab, San Francisco, CA, USA.
Harvard University · USDana-Farber Cancer Institute · USLangley Porter Psychiatric Hospital and Clinics · US

Funding

Mechanism and function of autosomal analog of X inactivationR01GM114864 · NIGMS · DANA-FARBER CANCER INST · PI GIMELBRANT, ALEXANDER · 2014 to 2018
$4.9M
Epigenetic loss of heterozygosity in a recurrent neurodevelopmental CNV regionR21MH105745 · NIMH · DANA-FARBER CANCER INST · PI GIMELBRANT, ALEXANDER, WEISS, LAUREN ANNE · 2014 to 2015
$456k
NIGMS NIH HHS R01 GM114864NIMH NIH HHS R21 MH105745
6 · The paper itself

Abstract

Over 3000 human genes can be expressed from a single allele in one cell, and from the other allele-or both-in neighboring cells. Little is known about the consequences of this epigenetic phenomenon, monoallelic expression (MAE). We hypothesized that MAE increases expression variability, with a potential impact on human disease. Here, we use a chromatin signature to infer MAE for genes in lymphoblastoid cell lines and human fetal brain tissue. We confirm that across clones MAE status correlates with expression level, and that in human tissue data sets, MAE genes show increased expression variability. We then compare mono- and biallelic genes at three distinct scales. In the human population, we observe that genes with polymorphisms influencing expression variance are more likely to be MAE (P<1.1 × 10

Indexed as

Gene ExpressionGenetic Predisposition to DiseaseGenetic VariationAnimalsBrainCell LineChromatinEpigenesis, GeneticGene Expression RegulationHumansMacaca mulattaMiceNeural Stem CellsNeurodevelopmental DisordersPan troglodytesRNA, MessengerChromatinRNA, Messenger

Identifiers

PMID28265118
PMCPMC5589474
OpenAlexW2592960442

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.