Evidence map›Paper›PMID 28264914›Full record

ArticleThe Journal of cell biology2017

Unique spectral signatures of the nucleic acid dye acridine orange can distinguish cell death by apoptosis and necroptosis.

Jason R Plemel, Andrew V Caprariello, Michael B Keough, Tyler J Henry, Shigeki Tsutsui, Tak H Chu, Geert J Schenk, Roel Klaver, V Wee Yong, Peter K Stys

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 96 citations in OpenAlex.

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  15. Bacteriophage therapy reducesAntimicrobial agents and chemotherapy · 2024
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  18. Oligodendrocyte Maturation Alters the Cell Death Mechanisms That Cause Demyelination.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2024
    Article
  19. Detection of dsRNA by Acridine Orange Staining.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Jason R PlemelDepartment of Clinical Neurosciences and the Hotchkiss Brain Institute, University of Calgary, Calgary, AB T2N 4N1, Canada.ORCID 0000-0003-1385-1464
Andrew V CaprarielloDepartment of Clinical Neurosciences and the Hotchkiss Brain Institute, University of Calgary, Calgary, AB T2N 4N1, Canada.
Michael B KeoughDepartment of Clinical Neurosciences and the Hotchkiss Brain Institute, University of Calgary, Calgary, AB T2N 4N1, Canada.ORCID 0000-0001-5361-3327
Tyler J HenryDepartment of Clinical Neurosciences and the Hotchkiss Brain Institute, University of Calgary, Calgary, AB T2N 4N1, Canada.
Shigeki TsutsuiDepartment of Clinical Neurosciences and the Hotchkiss Brain Institute, University of Calgary, Calgary, AB T2N 4N1, Canada.
Tak H ChuDepartment of Clinical Neurosciences and the Hotchkiss Brain Institute, University of Calgary, Calgary, AB T2N 4N1, Canada.
Geert J SchenkDepartment of Anatomy and Neurosciences, VU University Medical Center, 1081 HV Amsterdam, Netherlands.
Roel KlaverDepartment of Anatomy and Neurosciences, VU University Medical Center, 1081 HV Amsterdam, Netherlands.ORCID 0000-0001-6506-6420
V Wee YongDepartment of Clinical Neurosciences and the Hotchkiss Brain Institute, University of Calgary, Calgary, AB T2N 4N1, Canada.
Peter K StysDepartment of Clinical Neurosciences and the Hotchkiss Brain Institute, University of Calgary, Calgary, AB T2N 4N1, Canada pstys@ucalgary.ca.ORCID 0000-0003-0326-4194
University of Calgary · CAAmsterdam UMC Location Vrije Universiteit Amsterdam · NL

Funding

CIHR
6 · The paper itself

Abstract

Cellular injury and death are ubiquitous features of disease, yet tools to detect them are limited and insensitive to subtle pathological changes. Acridine orange (AO), a nucleic acid dye with unique spectral properties, enables real-time measurement of RNA and DNA as proxies for cell viability during exposure to various noxious stimuli. This tool illuminates spectral signatures unique to various modes of cell death, such as cells undergoing apoptosis versus necrosis/necroptosis. This new approach also shows that cellular RNA decreases during necrotic, necroptotic, and apoptotic cell death caused by demyelinating, ischemic, and traumatic injuries, implying its involvement in a wide spectrum of tissue pathologies. Furthermore, cells with pathologically low levels of cytoplasmic RNA are detected earlier and in higher numbers than with standard markers including TdT-mediated dUTP biotin nick-end labeling and cleaved caspase 3 immunofluorescence. Our technique highlights AO-labeled cytoplasmic RNA as an important early marker of cellular injury and a sensitive indicator of various modes of cell death in a range of experimental models.

Indexed as

Acridine OrangeAnimalsApoptosisCaspase 3Cell DeathCell LineDeoxyuracil NucleotidesHumansIn Situ Nick-End LabelingMice, Inbred C57BLNecrosisNucleic AcidsRNAAcridine OrangeCaspase 3Deoxyuracil Nucleotidesdeoxyuridine triphosphateNucleic AcidsRNA

Identifiers

PMID28264914
PMCPMC5379938
OpenAlexW2591730025

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.