Evidence map›Paper›PMID 28264836›Full record

ArticleDevelopment (Cambridge, England)2017

A systems-level approach reveals new gene regulatory modules in the developing ear.

Jingchen Chen, Monica Tambalo, Meyer Barembaum, Ramya Ranganathan, Marcos Simões-Costa, Marianne E Bronner, Andrea Streit

Open access · hybridAbstract read
In one paragraph

Article in Development (Cambridge, England), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 34 citations in OpenAlex.

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  7. Sox8 remodels the cranial ectoderm to generate the ear.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  8. Comparative assessment of Fgf's diverse roles in inner ear development: A zebrafish perspective.Developmental dynamics : an official publication of the American Association of Anatomists · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Jingchen ChenDepartment of Craniofacial Development and Stem Cell Biology, King's College London, London SE1 9RT, UK.
Monica TambaloDepartment of Craniofacial Development and Stem Cell Biology, King's College London, London SE1 9RT, UK.
Meyer BarembaumDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA.
Ramya RanganathanDepartment of Craniofacial Development and Stem Cell Biology, King's College London, London SE1 9RT, UK.
Marcos Simões-CostaDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA.
Marianne E BronnerDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA.
Andrea StreitDepartment of Craniofacial Development and Stem Cell Biology, King's College London, London SE1 9RT, UK andrea.streit@kcl.ac.uk.ORCID 0000-0001-7664-7917
King's College London · GBCalifornia Institute of Technology · US

Funding

Gene regulatory network controlling commitment to ear identityR01DC011577 · NIDCD · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI BRONNER, MARIANNE, STREIT, ANDREA · 2012 to 2016
$2.6M
NIDCD NIH HHS R01 DC011577
6 · The paper itself

Abstract

The inner ear is a complex vertebrate sense organ, yet it arises from a simple epithelium, the otic placode. Specification towards otic fate requires diverse signals and transcriptional inputs that act sequentially and/or in parallel. Using the chick embryo, we uncover novel genes in the gene regulatory network underlying otic commitment and reveal dynamic changes in gene expression. Functional analysis of selected transcription factors reveals the genetic hierarchy underlying the transition from progenitor to committed precursor, integrating known and novel molecular players. Our results not only characterize the otic transcriptome in unprecedented detail, but also identify new gene interactions responsible for inner ear development and for the segregation of the otic lineage from epibranchial progenitors. By recapitulating the embryonic programme, the genes and genetic sub-circuits discovered here might be useful for reprogramming naïve cells towards otic identity to restore hearing loss.

Indexed as

Gene Expression Regulation, DevelopmentalGene Regulatory NetworksAnimalsChick EmbryoCluster AnalysisEar, InnerFeedback, PhysiologicalModels, BiologicalRNA, MessengerSystems BiologyTime FactorsTranscription FactorsTranscription, GeneticRNA, MessengerTranscription FactorsAuditory systemCell fateChickEmbryoHearingPlacodeTranscription factor

Identifiers

PMID28264836
PMCPMC5399671
OpenAlexW2593645040

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.